Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme24091g00001 ATGGCACGATCCTTACCGCTCGACAAGCATAAGTTAGTGACCAATTTGAGGAATATGTTTGGTGAGGTTGTTGCTGTTACTGGCGATGGAACAAATGATGCTCCTGCATTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACCGAGGTTGCAAAAGAAAAGGCTGATGTGATTATAATGGATGATAATTTCGCGACTATTGTCAATGTGGTGAAATGGGGACGGGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTTAATGTTGTTGCACTTATTATCAACTTTGTCTCTGCATGCATCACTGGGTCTGCACCACTCACAGCTGTTCAGTTACTTTGGGTCAACTTGATTATGGACACCCTAGGGGCATTAGCCCTTGCTACTGAACCTCCCAACGATGGACTTTTGAAAAGGCCTCCTGTTGGAAGGGGAGCAAGCTTTATCACCAAAACTATGTGGAGGAATATCATTGGTCAAAGTATTTATCAATTAATTGTACTTGCAATTCTAAATTTCGATGGAAAGAGGCTACTCGGAATTTATGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAG 627 0.4147 MARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKEKADVIIMDDNFATIVNVVKWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVGRGASFITKTMWRNIIGQSIYQLIVLAILNFDGKRLLGIYGSDATEVLNTLIFNSFVFCQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme24091g00001 209 PANTHER CATION TRANSPORTING ATPASE 1 209 - -
Trme24091g00001 209 NCBIfam HAD-IC family P-type ATPase 1 115 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme24091g00001 209 Gene3D - 41 209 - -
Trme24091g00001 209 PRINTS H+-transporting ATPase (proton pump) signature 59 84 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme24091g00001 209 PRINTS H+-transporting ATPase (proton pump) signature 27 43 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme24091g00001 209 SUPERFAMILY HAD-like 2 76 IPR036412 -
Trme24091g00001 209 Pfam Cation transporting ATPase, C-terminus 112 209 IPR006068 -
Trme24091g00001 209 PRINTS P-type cation-transporting ATPase superfamily signature 27 46 - -
Trme24091g00001 209 PRINTS P-type cation-transporting ATPase superfamily signature 51 63 - -
Trme24091g00001 209 Pfam haloacid dehalogenase-like hydrolase 15 71 - -
Trme24091g00001 209 FunFam Calcium-transporting ATPase 44 209 - -
Trme24091g00001 209 SUPERFAMILY Calcium ATPase, transmembrane domain M 77 209 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme24091g00001 Trme-Chr24091 225 1231 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme24091g00001 1 209 Primary Pumps ATPases AT3G57330 87.560 1.18e-124 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme24091g00001 K01537 - gmx:100798481 385.185