Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme240507g00001 GAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGGCATAGCCGACTGATTCCCCAAGGAGGGCTTTCCGAGTTCCCTGATGCCATTCTGAATGGCAAACGCCTTGATCTCTACAACTTATATAAAGAGGTGAGTCAGTGA 150 0.4667 EEFLKDVMEFLILRGHSRLIPQGGLSEFPDAILNGKRLDLYNLYKEVSQ 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme240507g00001 49 Gene3D - 1 49 IPR036431 GO:0003677
Trme240507g00001 49 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 1 47 IPR042293 -
Trme240507g00001 49 Pfam ARID/BRIGHT DNA binding domain 1 49 IPR001606 GO:0003677
Trme240507g00001 49 ProSiteProfiles ARID domain profile. 1 49 IPR001606 GO:0003677
Trme240507g00001 49 SUPERFAMILY ARID-like 1 48 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme240507g00001 Trme-Chr240507 93 242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme240507g00001 1 47 ARID Transcription Factor Family AT3G43240 74.468 3.02e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trme240507g00001 ARID 4.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme240507g00001 - - vvo:131616466 95.5153