Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme239g00001 ATGGAGCACATNCTTTCAAGGTACGGTGCCGAGCAACAGCAGCCTAATGCTCAGCCTCCACCACAAGTTGTGGAGCTTGATACTGCCATTCTGCAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTAAGGATGACGGGTAAGGAGCTCGATGGATTGCAGATTAAGGAACTGCAGGACCTAGAAAATCAACTGAGTGAAGCGATATTATCTGTCAAAGGCAAGAAGGAACAAGTGCTTGTTGAACAACTTGAGAAATCCAGGTTACAGGAGCAAATGGCTATGGCAGAGATTGAAGATCTGCGTAAACAACTTGAGGAGATAAAGAATAAAACAAAGTCAGAGTTAGGGTCGTCATCATCAGATCATGGTAGCAAGTACAGATCATTGAGGATGAGAGCTTCCAACTGCTAG 414 0.4493 MEHXLSRYGAEQQQPNAQPPPQVVELDTAILQEEMAKLRSAYVRMTGKELDGLQIKELQDLENQLSEAILSVKGKKEQVLVEQLEKSRLQEQMAMAEIEDLRKQLEEIKNKTKSELGSSSSDHGSKYRSLRMRASNC 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme239g00001 137 Pfam K-box region 26 105 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trme239g00001 137 Coils Coil 81 118 - -
Trme239g00001 137 MobiDBLite consensus disorder prediction 1 20 - -
Trme239g00001 137 MobiDBLite consensus disorder prediction 104 137 - -
Trme239g00001 137 ProSiteProfiles K-box domain profile. 21 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trme239g00001 137 MobiDBLite consensus disorder prediction 114 137 - -
Trme239g00001 137 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme239g00001 Trme-Chr239 386 1835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme239g00001 1 110 MADS-box Gene Family AT5G13790 39.823 6.99e-18 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme239g00001 - - tpra:123891316 196.438