Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme239953g00001 ATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTACCTTAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGATATACAAG 160 0.3563 MDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQ 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme239953g00001 53 Pfam No apical meristem (NAM) protein 8 52 IPR003441 GO:0003677|GO:0006355
Trme239953g00001 53 Gene3D NAC domain 16 53 IPR036093 GO:0003677|GO:0006355
Trme239953g00001 53 ProSiteProfiles NAC domain profile. 7 53 IPR003441 GO:0003677|GO:0006355
Trme239953g00001 53 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 52 - -
Trme239953g00001 53 SUPERFAMILY NAC domain 4 52 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme239953g00001 Trme-Chr239953 8 167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme239953g00001 3 53 NAC Transcription Factor Family AT1G71930 82.353 5.87e-27 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme239953g00001 NAM 4.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme239953g00001 - - qsa:O6P43_004088 113.235