Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2398g00001 ATGACCGTTTTTCTTGGTCAATTAGATTTCATGGCATGGTTTGAAACTGGAGTTACAGATTCTTATGGTGATAGTGGTGGGGATTCATGGACTCCAGCGAGCTCTACTTTCAGCTACAATATTGCAAGCTCCAATGATGTTGTTGGGCGTGAGAATCAGCTTGAATCAACATATCTTTATATACAAATGGAGTACTGTCCCATGACTCTTCGCCAGATGTTTGAATCGTATAATCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTAGAAGGCTTGGCACACATACATGGGCAAGGAATAATTCATCGAGACTTAACACCAAGTAACATATTCTTTGATGCTCGTAATGATATTAAAATCGGTGACTTTGGCCTTGCCAAGTTCTTGAAGTTGGAGCAGCTCGATCAAGATCTAGCCCATCTTGCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTTTATACAGCTCCTGAAATTGAGCAAGGATGGCCTAAGATTGATGAAAAG 537 0.406 MTVFLGQLDFMAWFETGVTDSYGDSGGDSWTPASSTFSYNIASSNDVVGRENQLESTYLYIQMEYCPMTLRQMFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLAHLADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2398g00001 179 Gene3D Transferase(Phosphotransferase) domain 1 49 179 - -
Trme2398g00001 179 SMART serkin_6 2 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2398g00001 179 Pfam Protein kinase domain 55 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2398g00001 179 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 33 173 - -
Trme2398g00001 179 ProSiteProfiles Protein kinase domain profile. 1 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2398g00001 179 ProSitePatterns Tyrosine protein kinases specific active-site signature. 104 116 IPR008266 GO:0004672|GO:0006468
Trme2398g00001 179 SUPERFAMILY Protein kinase-like (PK-like) 55 178 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2398g00001 Trme-Chr2398 25 1713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2398g00001 40 131 MAP Kinase Gene Family AT3G45640 38.043 1.77e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Trme2398g00001 Pkinase 6.9e-25 CL0016