Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23987g00001 AAGGGAGATATGGGAGCTATGGAGTTTACACACAGGATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGTTGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTGTCTTTGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGCTTGTGTTAGAGATTCCCATGACATTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTATGTCTCTATGAGTGGTTCCTCTGATCCTTTAATCACTCACACCGAAGCAGGGAAGCTATTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGTTGCGTTCCATACAGCAGTCACCTATGACAATAGAAGAAGTACTAATGGTCCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTATTGCTCTGAATGCGCTTGCAGCAATATTTATAATACAAAAAGATTATTATCAAGCTGCTTTGCTGTACAATGAAGCTCTTGCTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTTCAATACAACTAA 603 0.4113 KGDMGAMEFTHRIFKQIMWRSSKQHVVDELDLPSQEECLSLLTLSPVEEHFYQRQHEACVRDSHDIIESLRNDILNRKVPDYVSMSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSIQQSPMTIEEVLMVLISKTKIEGEEALRRLVIALNALAAIFIIQKDYYQAALLYNEALALAEEHSEDFRLDPFQYN 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23987g00001 200 Pfam SNF2-related domain 11 117 IPR000330 GO:0005524|GO:0140658
Trme23987g00001 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23987g00001 Trme-Chr23987 304 1195 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme23987g00001 SNF2_N 1.8e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23987g00001 K15710 - gmx:100776659 319.701