Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme239828g00001 ATGGTCCTTACAAAGATGCGAAAAGTTGCAGAGACATATCTAATGACACCTGTGAAGAATGTTGTTGTTACTGTGCCTGCATACTTCAATGATTCTCAGCGAAAAGCCACCATAGATGCTGGTGCCATTGCTGGCCTTAATGTCGTTCAGATAATCAATGAACCCACTGCTGCAGCTATTGCATATGGTTTTGACAAGAAAAGTTACTGTGATGTTAAACGGAATATTTTTGTCTTTGACCTTGGTGGTGGTACTTTTGATGTGTCTATTCTTACAATCAAGGGTCATGTGTTTGACGTAAAAGCCACTGCTGGAAACACACACCTAGGGGGAGAGGACTTTGTTAACCGAAT 353 0.4136 MVLTKMRKVAETYLMTPVKNVVVTVPAYFNDSQRKATIDAGAIAGLNVVQIINEPTAAAIAYGFDKKSYCDVKRNIFVFDLGGGTFDVSILTIKGHVFDVKATAGNTHLGGEDFVNR 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme239828g00001 117 Gene3D - 75 117 - -
Trme239828g00001 117 FunFam Endoplasmic reticulum chaperone BiP 1 76 - -
Trme239828g00001 117 ProSitePatterns Heat shock hsp70 proteins family signature 2. 78 91 IPR018181 -
Trme239828g00001 117 PANTHER HEAT SHOCK PROTEIN 70KDA 1 117 IPR013126 GO:0005524|GO:0140662
Trme239828g00001 117 PRINTS 70kDa heat shock protein signature 21 41 - -
Trme239828g00001 117 PRINTS 70kDa heat shock protein signature 84 94 - -
Trme239828g00001 117 Gene3D - 1 74 - -
Trme239828g00001 117 SUPERFAMILY Actin-like ATPase domain 1 66 IPR043129 -
Trme239828g00001 117 SUPERFAMILY Actin-like ATPase domain 73 114 IPR043129 -
Trme239828g00001 117 Pfam Hsp70 protein 1 114 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme239828g00001 Trme-Chr239828 39 391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme239828g00001 1 117 Calmodulin-binding Proteins AT3G12580 71.795 8.04e-55 179