Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme2397g00001 | ATGGTTCTCCCTATAGCTGTTGAAGATGTAAAGAGAGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGACTCNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTAGGTTATGCGAAGGTGGAGAACTACTAGACCGGATATTGGGCAAGAAGGACAGCCGTTATACTGAAAAAGATGCTGCAGTTGTTGTAAGGCAGATGCTGAAGGTTGCAGCTCAGTGTCATTTACATGGCTTGGTACATCGCGACATGAAGCCAGAGAATTTTCTATTCAAATCAAACAAAGACGATTCAGCTTTAAAGGCTACTGATTTTGGTTTGTCCGATTTCATAAAACCTGGAAAGAGATTTCAAGATATTGTTGGAAGTGCTTACTACGTTGCACCAGAAGTGTTGAAACGGAAGTCGGGCCCTGAATCAGATGTATGGAGTATTGGTGTTATTACATACATATTGCTTTGTGGGAGACGACCATTTTGGGATAAGACCGAAGATGGCATCTTCAAGGAGGTCTTACGGAACAAGCCCGATTTCCGGCGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAGGAAATTGTTGGTAAAAGATCCTCGGGCAAGATTAACTGCTGCTCAGGCTCTAT | 757 | 0.3567 | MVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLCEGGELLDRILGKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSNKDDSALKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVRKLLVKDPRARLTAAQAL | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme2397g00001 | 252 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 252 | IPR011009 | - | |
| Trme2397g00001 | 252 | Pfam | Protein kinase domain | 9 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trme2397g00001 | 252 | ProSiteProfiles | Protein kinase domain profile. | 1 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trme2397g00001 | 252 | SMART | serkin_6 | 2 | 252 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trme2397g00001 | 252 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 119 | 131 | IPR008271 | GO:0004672|GO:0006468 | |
| Trme2397g00001 | 252 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 6 | 252 | - | - | |
| Trme2397g00001 | 252 | Coils | Coil | 76 | 76 | - | - | |
| Trme2397g00001 | 252 | FunFam | calcium-dependent protein kinase 28-like | 83 | 252 | - | - | |
| Trme2397g00001 | 252 | Gene3D | Transferase(Phosphotransferase) domain 1 | 8 | 252 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme2397g00001 | Trme-Chr2397 | 718 | 2145 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme2397g00001 | 1 | 252 | EF-hand Containing Proteins | AT2G17890 | 75.000 | 4.21e-132 | 383 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Trme2397g00001 | Pkinase | 5.1e-48 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme2397g00001 | K13412 | - | gmx:100817249 | 395.971 |