Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23967g00001 ATGGACAAAGTTATATACTGTTTGTTCTTTGTATTGATTTTGGTTTCATTTATCGGTTCGATTTTCTTCGGTATTTGGACGAAGAAGGATACTAAAAATGGAAGAATGAAGAGATGGTACCTTAATCCTGATCATACTGAAGTTTACTATGATCCTGATAGAGCAGTACTTGCAGCAATTCTTCATTTTTTTACAGCATTGATGTTGTATGGTTACTTCATTCCGATTTCGTTGTATGTTTCCATTGAAGTTGTGAAAGTTCTTCAAAGCATTTTCATCAACAACGATTTGAACATGTATCATGAGGAAACTGATAAGCCAGCGCATGCTCGTACGTCGAATTTGAACGAAGAACTTGGTCAAGTTGATACCATACTTTCGGATAAAACCGGAACATTAACTTGCAATTCTATGGAATTTATCAAGTGTTCTATCGGCGGTGTTGCTTATGGAAGAGGATTTACAGAAGTTGAGAGAGCTTTATCTAAGAGAAAAGATTCGTATTTCGGTCGGAAGATGAAAAATGACAAGAATGTTGCAAAAGCTGCTGAATCAAAATCAACCATTAAAGGATTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGGTGAGACAACCTAATGCCAATGTGATACAAAGCTTTCTAAGGGTATTAGCTGTATGCCATACTGCAATACCTGAAGTTGACGAAGCAACCGGTAAAATTTCGTACGAAGCTGAATCGCCTGACGAGGCTGCTTTTGTTGTTGCGGCAAGAGAATTCGGATTTGAATTTTATGAAAGGACACATTCAGCTATTTCACTTCATGAATTGGACCTCAATTCAAACGTGAAATCAGAAAGGTCCTACAATATTTTAAATGTATTAGAGTTTAGTAGTGCAAGAAAGCGAATGTCCGTAATCGTAAGAGACCACAAGGGTAAACTATTGCTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAACTACTTGGAAAGAATGGAAGAGAGTATGAAGAGCAGACTAAGTACCACATTAATGAATATGCCGATTCTGG 1043 0.371 MDKVIYCLFFVLILVSFIGSIFFGIWTKKDTKNGRMKRWYLNPDHTEVYYDPDRAVLAAILHFFTALMLYGYFIPISLYVSIEVVKVLQSIFINNDLNMYHEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGRGFTEVERALSKRKDSYFGRKMKNDKNVAKAAESKSTIKGFNFMDERIMNGNWVRQPNANVIQSFLRVLAVCHTAIPEVDEATGKISYEAESPDEAAFVVAAREFGFEFYERTHSAISLHELDLNSNVKSERSYNILNVLEFSSARKRMSVIVRDHKGKLLLLSKGADSVMFELLGKNGREYEEQTKYHINEYADSG 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23967g00001 348 Gene3D - 167 348 IPR023299 GO:0000166
Trme23967g00001 348 SUPERFAMILY HAD-like 114 138 IPR036412 -
Trme23967g00001 348 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 348 - -
Trme23967g00001 348 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 217 IPR023298 -
Trme23967g00001 348 Pfam Cation transport ATPase (P-type) 234 324 - -
Trme23967g00001 348 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 199 325 IPR023299 GO:0000166
Trme23967g00001 348 ProSitePatterns E1-E2 ATPases phosphorylation site. 128 134 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23967g00001 Trme-Chr23967 1 1251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23967g00001 1 348 Primary Pumps ATPases AT3G25610 68.768 4.10e-170 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23967g00001 K01530 - vvo:131609096 628.246