Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme239564g00001 ATGACACATCACAAGAATCTTGTGAGGTTGGTTGGTTTCTGCAACAAGGAGAATCATCGTCTTCTGGTTTACGAAATGATGAGAAATGGGACATTATCAAGTTTCATTTTTGGGGAGGAGGATAAAGATAAACCAAGTTGGGAACATAGAGCTAAAATTGTTCTTGAAATTGCAAGAGGCTTGATGTACCTGCATGAAGAGTGTGACCCTCAGATTATCCATTGCGACATAAAGCCGCAGAATGTTCTTCTAGACTCAAATTATACTGCAA 271 0.3911 MTHHKNLVRLVGFCNKENHRLLVYEMMRNGTLSSFIFGEEDKDKPSWEHRAKIVLEIARGLMYLHEECDPQIIHCDIKPQNVLLDSNYTA 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme239564g00001 90 Pfam Protein kinase domain 3 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme239564g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 1 90 - -
Trme239564g00001 90 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 90 - -
Trme239564g00001 90 FunFam Os07g0541700 protein 27 90 - -
Trme239564g00001 90 ProSitePatterns Serine/Threonine protein kinases active-site signature. 72 84 IPR008271 GO:0004672|GO:0006468
Trme239564g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 2 89 IPR011009 -
Trme239564g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme239564g00001 Trme-Chr239564 1 271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme239564g00001 3 90 Receptor kinase-like Gene Family AT1G49100 50.000 2.88e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme239564g00001 Pkinase 4.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme239564g00001 - - mtr:25485223 184.496