Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2392g00001 ATGGCTAGAGGTTTCAAAGACAAATTGGGTGAAGGAGGCTTTGGCACTGTGTTCAAGGGGAATTTACGTAGCGGTCCTTGTGTGGCAATCAAGATGTTAGGTAAGTCAAAAGGTAATGGACAAGATTTTATTAGCGAAGTAGCAACCATTGGAAGGATACATCATTTGAATGTGGTGCAATTAATTGGATTTTGTGCTGAGGGGTCAAAACGTGCTCTTGTTTATGAATATATGTCTAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGAAGCGTAGATATAAGTTACGGCCAAATTTTTGACATATCAGTTGGAGTAGCTCGTGGAATTGCTTATCTACACCATGGATGCGAAATGAAAATTTTGCATTTTGATATCAAACCTCACAACATCCTTCTTGATGAGAACTTCACCCCAAAAGTCTCTGACTTTGGATTGGCTAAGCTATATCCTATTGAGAATAGCATTATCACAATGACTGCGGCAAGAGGTACAATTGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTGTCCTATAAGGCTGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGTAGAAGGAAAAACCTTAATCCTCACGCGGAGCATTCAAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAGGAGCAAGACATAGAAATAGAAGATACCACTGAAGAGGAAAAGAAAATAATAAAGAAAATGATCATAGTTGCACTATGGTGTATACAATTGAAACCAGATGATCGTCCCTCAATGAGCAAAGTAGTGCAGATGCTCGAAGGAGACGTTGAAATCCTTCACATGCCTCCAAAGCCAATCCTTTATCCACATGACACGGTTGTAGACGATCTAAGAACTAACTTTGACCAAACAATGTCGAGTGATTACACCAGTTCTTATGATTCTGTGGAAATAGCAACTGGTTCTTTGATAGAGAATATTGATTGA 990 0.3808 MARGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLGKSKGNGQDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVYEYMSNGSLDKFIFSKEGSVDISYGQIFDISVGVARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPIENSIITMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNLNPHAEHSSQLYFPLWIYDQVEKEQDIEIEDTTEEEKKIIKKMIIVALWCIQLKPDDRPSMSKVVQMLEGDVEILHMPPKPILYPHDTVVDDLRTNFDQTMSSDYTSSYDSVEIATGSLIENID 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2392g00001 329 FunFam PR5-like receptor kinase 78 285 - -
Trme2392g00001 329 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Trme2392g00001 329 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Trme2392g00001 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Trme2392g00001 329 ProSiteProfiles Protein kinase domain profile. 3 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2392g00001 329 FunFam serine/threonine-protein kinase PBS1-like 1 77 - -
Trme2392g00001 329 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Trme2392g00001 329 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Trme2392g00001 329 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme2392g00001 329 Gene3D Transferase(Phosphotransferase) domain 1 79 280 - -
Trme2392g00001 329 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2392g00001 Trme-Chr2392 1277 2266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2392g00001 1 326 Receptor kinase-like Gene Family AT4G18250 50.746 4.91e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme2392g00001 Pkinase 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2392g00001 - - tpra:123893257 501.13