Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23905g00001 ATGAAGGCTAGCACCAATGTTAGGCATATTATCCTTCCATGTAATAATACTGCTATGGCACAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCGGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTACCTGGTGCGAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTCAGGTCTGGGAAATTCATGACATTGGTGGCAACCAATGTGGCGGCCAGRGGTCTAGACATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCTCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCTGGTATAAAATTTGAACGTGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGAAGTGTCTGATAGGTATGC 545 0.4459 MKASTNVRHIILPCNNTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFERVSAPQPDEIAKAMGGDAAEMITEVSDRYA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23905g00001 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 160 IPR027417 -
Trme23905g00001 182 Gene3D - 3 181 IPR027417 -
Trme23905g00001 182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 21 162 IPR001650 -
Trme23905g00001 182 SMART helicmild6 47 124 IPR001650 -
Trme23905g00001 182 CDD SF2_C_DEAD 7 133 - -
Trme23905g00001 182 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 4 165 - -
Trme23905g00001 182 Pfam Helicase conserved C-terminal domain 26 124 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23905g00001 Trme-Chr23905 1 1010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23905g00001 35 162 Eukaryotic Initiation Factors Gene Family AT3G19760 34.091 1.20e-17 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23905g00001 K16911 - psat:127137105 327.405