Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23890g00001 ATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCTTAATTGTAGGTGATCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATTTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTTAAGGATCCTATGACAAATGACTATGCTTTTGAGGCAGGTGCTATGGTGTTGGCTGACAATGGATTGTGCTGTATTGATGAGTTTGATAAAATGACCTCAGAGCATCAGGCTTTGCTGGAGGCAATGGAGCAACAATGTGTCTCTATTGCAAAGGCAGGATTGGTAGCTAGTTTATCATCCCGGACTTCTGTCTTAGCGGCTGCAAACCCCGTCGGTGGTCATTATAA 395 0.4557 MDQNKVPVRGDIHVLIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADNGLCCIDEFDKMTSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHY 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23890g00001 131 ProSiteProfiles MCM family domain profile. 1 131 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 Pfam MCM P-loop domain 3 131 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 Gene3D - 1 131 IPR027417 -
Trme23890g00001 131 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 131 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 126 IPR027417 -
Trme23890g00001 131 SMART mcm 1 131 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 PRINTS Mini-chromosome maintenance (MCM) protein family signature 120 131 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 PRINTS Mini-chromosome maintenance (MCM) protein family signature 69 83 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 PRINTS Mini-chromosome maintenance (MCM) protein family signature 9 24 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trme23890g00001 131 PRINTS Mini-chromosome maintenance (MCM) protein family signature 96 109 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23890g00001 Trme-Chr23890 64 1204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23890g00001 1 131 Core DNA Replication Machinery Family AT3G09660 92.366 4.74e-83 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23890g00001 K10737 - gmx:100784549 250.751