Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme238674g00001 ATGTTGGTGTACGAGTACATGAACCGTGGTTCACTCGATCGCAACCTCTTCGGTGGTGTTGGACAACCAGTTTTGGAATGGCAAGAGAGGCTAGATGTTGCACTTGGAACAGCGCGCGGACTTGCTTATCTTCACAGCGGATGTGAGCAAAAGATAATTCACTGCGATATCAAACCAGAGAATATTCTTTTGCATGATCATTTTCAAGCTAGAATATCTGATTTCGGACTTTCGAAACTTCTTAGTCCTGAACAATCTG 259 0.4363 MLVYEYMNRGSLDRNLFGGVGQPVLEWQERLDVALGTARGLAYLHSGCEQKIIHCDIKPENILLHDHFQARISDFGLSKLLSPEQS 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme238674g00001 86 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 86 - -
Trme238674g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 1 84 IPR011009 -
Trme238674g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
Trme238674g00001 86 ProSitePatterns Serine/Threonine protein kinases active-site signature. 52 64 IPR008271 GO:0004672|GO:0006468
Trme238674g00001 86 FunFam Protein kinase superfamily protein 7 80 - -
Trme238674g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme238674g00001 86 Pfam Protein kinase domain 2 85 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme238674g00001 Trme-Chr238674 29 287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme238674g00001 1 86 Trihelix Transcription Factor Family AT1G70460 52.326 9.35e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme238674g00001 Pkinase 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme238674g00001 - - psat:127084110 171.4