Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23860g00001 ATGTCAGGAAAGAGTAGGTCCCCAGCCGTTGTGATCGGCTACCTGATGAAGTCTAGAGGATGGAGACTTGCACAGAGTTATCAGTGGGTAAAGGAACGCAGAACTTCCGTTGAATTATCTGAAGGATGCTTATACATTAATAAGGACTTCTGTAGGAAAGTTCCTTATAGATCTGTTAACAACATCAAGTGTGATGATGACGGTGCCTACCAGCAACTACAGGAGTACGAGCAAAAGCTATTCGGATCAGTCGGCAACTCGATACTCTCTNCTGGTTTCTCACCTGCAGCAGGACCATCTTCAATTAGCTTTGGCTTCCCAAAAACCAACGAACTACCTCAACTTCCTGCCTTCGGCTCCACTACAACTCCTTCAATTTTCGCCCGAGCACCGTCCAACATAGCTCCTTCCGATTTCACATTTGGAGCTGGTCAGAATGTTACTGGAAATCCTTTCAATACAAATCCATCTAATCCTAATGCGACCGATATTCAAATGGATTGA 504 0.4464 MSGKSRSPAVVIGYLMKSRGWRLAQSYQWVKERRTSVELSEGCLYINKDFCRKVPYRSVNNIKCDDDGAYQQLQEYEQKLFGSVGNSILSXGFSPAAGPSSISFGFPKTNELPQLPAFGSTTTPSIFARAPSNIAPSDFTFGAGQNVTGNPFNTNPSNPNATDIQMD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23860g00001 167 MobiDBLite consensus disorder prediction 145 167 - -
Trme23860g00001 167 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 51 IPR029021 -
Trme23860g00001 167 Gene3D Protein tyrosine phosphatase superfamily 1 87 IPR029021 -
Trme23860g00001 167 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 67 167 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23860g00001 Trme-Chr23860 19 953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23860g00001 1 40 Protein tyrosine phosphatase (PTP) family AT2G04550 72.500 1.01e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23860g00001 K04459 - gmx:100806021 179.104