Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme238609g00001 ATTCGATATCGCCCTAATGCTCCGTTAGTCCTCAAGGGAATCACTTGTACATTTAAAGAAGCGAGTAGAGTAGGAGTTGTTGGAAGGACTGGAAGTGGTAAAAGTACACTTATAAGTGCTTTATTTCGCTTAGTTGAGCCATCAGGAGGTGATATTCTCATTGATGGGATGAACATTTGCTCAATTGGGTTGAAAGATTTAAGAATGAGGCTAAGCATAATCCCTCAAGAACCAACTCTTTTCAAGGGAAGCATTAGGACAAACCTGGATCCTCTAGGCCTGTACTCAGATGATGAAATATGGAAGGTGAACTAA 315 0.4063 IRYRPNAPLVLKGITCTFKEASRVGVVGRTGSGKSTLISALFRLVEPSGGDILIDGMNICSIGLKDLRMRLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKVN 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme238609g00001 104 Gene3D - 1 104 IPR027417 -
Trme238609g00001 104 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 103 - -
Trme238609g00001 104 Pfam ABC transporter 11 102 IPR003439 GO:0005524
Trme238609g00001 104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 102 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme238609g00001 Trme-Chr238609 78 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme238609g00001 4 89 Calmodulin-binding Proteins AT2G36910 33.721 2.61e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme238609g00001 - - vvo:131595584 188.734