Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23858g00001 ATGGCTGTGACAATTAGCAATACAACTCAGTTTTCAAACATAGATGAAATTAACTCTGAGAAAGCTTCTTGGAATTTAAAGGCCACTGTTATAAGACTATGGAATGTTAATGACTTTAATCGTATGAACAGTCCTTTCTCAAATGAAATGGTTTTACAAGACATGGATCGGAATAGGATCCATGCCACTGTCAAAAAAACATTGATTTATAAATTCAAAGATCAACTCATAGAAGGAAAAACTTACAGTTTTCAAAATCTTAGTGTCTCTATTAATGGGGGAGCATATCGCACTACACATCATCCATATAAGTTGAATTTTCAATATTCTTCTGTGGTTAAGAGGATTCCTAATTTGGCTGTTGATCTATCTCCATTTGACTTTGTGCCTATTGCTAATGTTGTGAGCGGTGTTTATGATACCGATTACTTACTTGATGTCATAGGCGTTTTGACTGGTGTAGGAACTGAGCGTGAGATCACAAACAGTAATGGGACAACCACAAAACTTAATGTCATTGCCTTAGAGCAAGATGGGCACAAGCTGCAGTGTTCTCTGTTCGGACCTTATGTTGACGAGCTTAATACTTTTCTT 594 0.3636 MAVTISNTTQFSNIDEINSEKASWNLKATVIRLWNVNDFNRMNSPFSNEMVLQDMDRNRIHATVKKTLIYKFKDQLIEGKTYSFQNLSVSINGGAYRTTHHPYKLNFQYSSVVKRIPNLAVDLSPFDFVPIANVVSGVYDTDYLLDVIGVLTGVGTEREITNSNGTTTKLNVIALEQDGHKLQCSLFGPYVDELNTFL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23858g00001 198 CDD RPA1_DBD_A_like 30 113 - -
Trme23858g00001 198 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trme23858g00001 198 Gene3D - 121 198 IPR012340 -
Trme23858g00001 198 Gene3D - 10 118 IPR012340 -
Trme23858g00001 198 SUPERFAMILY Nucleic acid-binding proteins 11 119 IPR012340 -
Trme23858g00001 198 SUPERFAMILY Nucleic acid-binding proteins 126 194 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23858g00001 Trme-Chr23858 1 782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23858g00001 14 192 Core DNA Replication Machinery Family AT2G06510 23.784 8.41e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23858g00001 - - tpra:123915358 295.819