Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23857g00001 GGCTGTTTTGTATGTATTATCATCAGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAATAGCGTTAACTTTTCTGAAGAGAAACTCTGCAAATGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTGCATGTAAATCATATTCTTCATCGTGATGTCAAGCATGTTATCCTTACGCTGTACATGTTCGATGCAGGTGACTTTGGTCTCGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTGAGTAATACTGCAAATGTACCATTTATATTTTCCCTGAGCTTCTTGCCGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGTATGA 354 0.3955 GCFVCIIISYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKHVILTLYMFDAGDFGLAKMLTSDDLASSVSNTANVPFIFSLSFLPIYPMALNQISGLWV 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23857g00001 117 Pfam Protein kinase domain 4 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23857g00001 117 SUPERFAMILY Protein kinase-like (PK-like) 3 87 IPR011009 -
Trme23857g00001 117 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 2 90 - -
Trme23857g00001 117 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23857g00001 117 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23857g00001 Trme-Chr23857 350 1264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23857g00001 3 58 AGC Kinase Gene Family AT5G47750 33.929 3.73e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trme23857g00001 Pkinase 1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23857g00001 K08857 - zju:107412173 145.591