Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2384g00001 ATGTCATCGTATATCCCTCGAAAGTTCTTTAGGATTATGCGAAATGAAGATCTTCAAAACGGAGAAATTAGGGTTCCAAAAGAATTTGTGGAGTTACACTGGAAAAGTGTATCAAATCCTGTAGTGTTTATTCTCCCAAATGGTGCTACACAAGAAATATATTGGGTGAAACGTAATGGTGATATTTGGTTTCAAAAGAATTGGGAAAAATTTGCTAAGTTTTTGGAATTTAGATATAAAGTAAATTTTGAATACTTTGGAGGGTCATATTTCAAGATTGAGATATATGGTGTCAATACATTGGAAATTGACTATTCCAATATCAAATTCATAGATGAAGTTAATGGTGGAAAAGAAGTTGAAGAACCTATTGAAGTGAGTGATGATAGTGATAAGAGTTTAGATGAAAGTGAAATACCTACACAAACTCAAAGGATCAAAAATGGCAAGAGAAAAATGATTATGGATTCTAATGCTAATCATCAAACTATATCAGGTAGTAATAGAGGAGACATGAATAAGAAGGCTAAAAAATGCTCAACAAGTAAAGCCAATGGAAGAGATGATGAAATAGAAGAAGTTGAATTGAGTGATGACATTGATGAAAGTGACATACCCACACAAATTCAAAGGACAAAAAATGGCAAAAGAAAAGATAAACTACAGTATCCTCCACACGTAGAAAGAGAAGAGGCATGA 699 0.3276 MSSYIPRKFFRIMRNEDLQNGEIRVPKEFVELHWKSVSNPVVFILPNGATQEIYWVKRNGDIWFQKNWEKFAKFLEFRYKVNFEYFGGSYFKIEIYGVNTLEIDYSNIKFIDEVNGGKEVEEPIEVSDDSDKSLDESEIPTQTQRIKNGKRKMIMDSNANHQTISGSNRGDMNKKAKKCSTSKANGRDDEIEEVELSDDIDESDIPTQIQRTKNGKRKDKLQYPPHVEREEA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2384g00001 232 SUPERFAMILY DNA-binding pseudobarrel domain 7 99 IPR015300 -
Trme2384g00001 232 CDD B3_DNA 7 96 IPR003340 GO:0003677
Trme2384g00001 232 PANTHER B3 DOMAIN-CONTAINING 6 188 - -
Trme2384g00001 232 MobiDBLite consensus disorder prediction 123 232 - -
Trme2384g00001 232 MobiDBLite consensus disorder prediction 211 232 - -
Trme2384g00001 232 MobiDBLite consensus disorder prediction 171 190 - -
Trme2384g00001 232 Gene3D - 4 100 IPR015300 -
Trme2384g00001 232 MobiDBLite consensus disorder prediction 155 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2384g00001 5 199 B3 DNA Binding Superfamily AT3G18990 25.481 7.47e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2384g00001 - - mtr:120578013 203.371