Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23847g00001 ATTGTTTCTGGTGAGTTTGTTGATTTCTTTCAGAGTACCAAGCTTGACACTGAACTGTTGGATAAGCTGAAAGTAACACTGGTGAGTCTTAAAGCTGTACTGAATGATGCTGCGGAGAAACAGATCACTAATCCTGCTGTCAAGCAGTGGCTGAATATGCTGCTAGATGGTGTCTTTGAAGCTGATGCTTTGTTTGATGAAATCAACACGGAGGCTTTGAGGTGCAAAGTGGAAGCTAATCAGAATCTTGGATTGAAAAGTGGTGTTTCCAACAATTTTTGGAATGTAACTCCTACAAGTTCTGTTGTGGGTGATGAATCTGCTATATCTGGCAGAGATGATGACAGAAAGAAACTTAAAGAGTTTTTGCTGTCAGAGGATGGTAGTGGAGGTGATGGAAGGAAAATAGGAGTGATTTCCATTGTAGGCATGGGCGGGCTAGGAAAAACAACACTTGCTAAACTCCTTTACAATGATCCAGAAGTGAAGGAGAAATTTGAGGTGAGAGGGTGGGCACATGTCTCAAAAGATCTTGATGTTGTTGCTGTCACTAAAACCCTTCTTGAATCTGTCACTTCTGAAACAATTACAGCAAGTGACTCGAACAAACTCCAAGTACAATTGCAGCAAAGATTAAGCAACAAAAAGTTTTTGCTGGTATTGGATGATATGTGGCATGGAAGATATGTTGGTTGGAATAGTATGAATGACATCTTTAATGTTGGGAAAATGGGGAGTAAGATCATTATCACAACACGAGATGAAAGAGTTCTACTACCCATGCAAACCTTTTATGTCCACCGTTTAAGATCTTTGGAACCTGAAGATTGCTGGTCTTTACTAGCCAGACATGCATTTGTAGCAAGCAACAATCAACAACGATCCAATCTAGAAGAAATTGGAAGAGAAATTGCCAAAAAATGTGATGGTTTACCATTAACTGCAGTGGCACTAGGGGGCCTTCTTCGCACCAATTTGTCAGAATATTACTGGAATGATGTTTTAAAAAGCAGTATTTGGGATTTGACTAAACTGGAGAAGGCTTAG 1047 0.3992 IVSGEFVDFFQSTKLDTELLDKLKVTLVSLKAVLNDAAEKQITNPAVKQWLNMLLDGVFEADALFDEINTEALRCKVEANQNLGLKSGVSNNFWNVTPTSSVVGDESAISGRDDDRKKLKEFLLSEDGSGGDGRKIGVISIVGMGGLGKTTLAKLLYNDPEVKEKFEVRGWAHVSKDLDVVAVTKTLLESVTSETITASDSNKLQVQLQQRLSNKKFLLVLDDMWHGRYVGWNSMNDIFNVGKMGSKIIITTRDERVLLPMQTFYVHRLRSLEPEDCWSLLARHAFVASNNQQRSNLEEIGREIAKKCDGLPLTAVALGGLLRTNLSEYYWNDVLKSSIWDLTKLEKA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23847g00001 348 PANTHER DISEASE RESISTANCE PROTEIN RP 75 337 IPR044974 GO:0006952
Trme23847g00001 348 PRINTS Disease resistance protein signature 138 153 - -
Trme23847g00001 348 PRINTS Disease resistance protein signature 211 225 - -
Trme23847g00001 348 PRINTS Disease resistance protein signature 308 322 - -
Trme23847g00001 348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 342 IPR027417 -
Trme23847g00001 348 FunFam Probable disease resistance protein At1g61300 95 264 - -
Trme23847g00001 348 Gene3D - 271 347 IPR042197 -
Trme23847g00001 348 Gene3D - 12 96 - -
Trme23847g00001 348 Coils Coil 20 40 - -
Trme23847g00001 348 Gene3D - 97 265 IPR027417 -
Trme23847g00001 348 Pfam NB-ARC domain 133 336 IPR002182 GO:0043531
Trme23847g00001 348 Pfam Rx N-terminal domain 18 81 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23847g00001 Trme-Chr23847 1 1276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23847g00001 136 320 WRKY Transcription Factor Family AT5G45050 29.032 5.40e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23847g00001 - - mtr:11428146 499.204