Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme23784g00001 | ATGGCAGCTGGTTTAGTCAAGCTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTGATCGAAGGAATGGGAGAATTGCATCTTGAAATCATCGTTGATCGTCTCAAAAGAGAATATAAGGTAGAAGCTAATGTTGGTGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCACGGAAGTAAGATATGTGCACAAGAAACAATCAGGCGGACAAGGTCAGTTTGCAGATATAACCGTACGTTTTGAACCCATGGATCCAGGTAGTGGATATGAATTCAAGAGTGAAATCAAAGGAGGTTCAGTTCCAAAAGAATATGTTCCTGGTGTGGTTAAAGGATTGGAAGAGTGTATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGATGTACGCGCAGTACTTGTGGATGGTACTTACCATGATGTGGATTCAAGTGTGTTGGCTTTCCAGTTGGCAGCGAGAGGAGCTTTTCGGGAAGGGATGAGAAAANCCGGACCGAGAATGCTCGAACCTATAATGAAAGTTGAAGTTGTTACTCCCGAAGAACATTTAGGAGATGTAATCGGTGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCAGGTGGACTCAAGGTGGTTGATGCACAAGTACCTCTTGCTGAGATGTTTCAGTATGTCAGTACACTAAGAGGGATGACAAAGGGCCGTGCATC | 737 | 0.4423 | MAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREYKVEANVGAPQVNYRESISKITEVRYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGSVPKEYVPGVVKGLEECMSNGVLAGFPVVDVRAVLVDGTYHDVDSSVLAFQLAARGAFREGMRKXGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDAQVPLAEMFQYVSTLRGMTKGRAS | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme23784g00001 | 246 | SUPERFAMILY | EF-G C-terminal domain-like | 180 | 246 | IPR035647 | - | |
| Trme23784g00001 | 246 | FunFam | Elongation factor G | 1 | 61 | - | - | |
| Trme23784g00001 | 246 | SMART | EFG_IV_2 | 57 | 175 | IPR005517 | GO:0005525 | |
| Trme23784g00001 | 246 | CDD | EFG_III | 1 | 57 | IPR009022 | - | |
| Trme23784g00001 | 246 | Pfam | Elongation factor G C-terminus | 178 | 246 | IPR000640 | - | |
| Trme23784g00001 | 246 | CDD | EFG_mtEFG1_IV | 60 | 173 | IPR005517 | GO:0005525 | |
| Trme23784g00001 | 246 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 11 | 60 | - | - | |
| Trme23784g00001 | 246 | Gene3D | - | 181 | 246 | - | - | |
| Trme23784g00001 | 246 | Pfam | Elongation Factor G, domain III | 1 | 54 | IPR041095 | - | |
| Trme23784g00001 | 246 | CDD | EFG_mtEFG_C | 180 | 246 | IPR035649 | - | |
| Trme23784g00001 | 246 | SUPERFAMILY | EF-G C-terminal domain-like | 2 | 58 | IPR035647 | - | |
| Trme23784g00001 | 246 | PANTHER | TRANSLATION ELONGATION FACTOR G-RELATED | 1 | 246 | - | - | |
| Trme23784g00001 | 246 | FunFam | Elongation factor G | 62 | 193 | - | - | |
| Trme23784g00001 | 246 | FunFam | Elongation factor G | 181 | 246 | - | - | |
| Trme23784g00001 | 246 | SMART | EFG_C_a | 177 | 246 | IPR000640 | - | |
| Trme23784g00001 | 246 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 56 | 176 | IPR020568 | - | |
| Trme23784g00001 | 246 | Gene3D | - | 61 | 180 | IPR014721 | - | |
| Trme23784g00001 | 246 | Pfam | Elongation factor G, domain IV | 56 | 173 | IPR005517 | GO:0005525 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme23784g00001 | Trme-Chr23784 | 1 | 1239 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme23784g00001 | 1 | 245 | Eukaryotic Initiation Factors Gene Family | AT1G56070 | 25.000 | 2.96e-12 | 64.3 |