Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2376g00001 GTTTCTGCCGACCAGCCACCCGAAGAAGAGGAAGAAGATGCTGACTGTGATCATTCTTTTGTTTTAAAAGACGACCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTATATGTCTGAACCGGGGAATGCCAAAGAAAAAGCAGATATATTTGGAGTTAAGATTGCTAAAGATGATATCATGGTAACTGAAATATCAGCACATCCTCGGCATGCAAATCAAATGAAACCGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGCGGGGGACCATCCTGGGGGATGTATTCTGGCTCACGCTCCAGGATCTGGAAAGACATTCATGATTATCAGTTTCGTGCAGAGTTTTCTAGGAAAGTATCCCAATGCACGACCTCTGGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAGTTTCAGACATGGCAAGTGGAAGATGTACCACTTTATGACCTTTACACTGTGAAGGCTGACAGTAGATCACAACAATTGGAAGTCTTAAAACAGTGGGTGGATAAGAAGAGCATCCTTTTTTTAGGATACCAACAGTTTTCTTCCATTATCCGTGATAACTGTAATAGCAATGCATCAATATCTTGCCAAGATATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACACACTCCCAGGAACGAGAATACTGATATTGTACAGTCGCTTGCAAAAGTACAAACACCAAGAAAAGTTGTACTGTCTGGAACCCTATATCAAAATCATGTCAAGGAGGTATTTAACGTGCTTAACCTTGTTCGCCCAAAGTTTTTAAAGATGGAAACATCTAAGCATATTGCCCGGCGCATTAAGAGTAGAATCCATATATCTGGTGGGAATGACTTCTGTGAATTGGTTGAAAGGACTTTGCAAACGGACCCAGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACCGGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGTTGCTCAATCTTACACCTAGACAGAAGCATGAAGTTGAGAAAATAAAGACGAAGTATAAAAAGTTTAAGATGTCTTCTGTAGGTAGTGCAGTATATCTGCACCCAAAATTGACACCGATTGCAGATAAATGGGATGAAAATTCTATATCTGATGTTGATCGTATAATGGATGATCTAATAGCAAACCTCGATGTGAGAGATGGTGTTAAATCAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAAGTGGGGAGAAGCTTTTGGTGTTCAGTCAATACCTCTTGCCTCTGAAATATTTAGAAAGGTTAGCAAAGAAATGGAAGGGATGGGGTCTTGACAAAGAAATTTTTGTGATTTCAGGAGATTCATCCACTGAACAAAGGGAGCGTGCCATGGAAAACTTTAACAATTCACCTGATGCCAAAATATTTTTTGGGTCCATCAAAGCATGTGGCGAGGGTATATCATTGGTTGGGGCATCCCGGATCATCATCTTAGACGTCCATCTTAATCCCTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTTTATCGATTGATAGCTGCTGATTCTCCAGAAGAGCAAGATCACAGTACTTGTTTCAAGAAAGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCATTTGAAGTTGAAACAGTTGATGTGAAGGAATGCGGTGATCTGTTTCTAGAAAGTCCATTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGTGCAGAAATCCTCTGCTCTAACATTGCTATTGCATCAACTGATTAG 1929 0.4023 VSADQPPEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSEPGNAKEKADIFGVKIAKDDIMVTEISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFVQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDVPLYDLYTVKADSRSQQLEVLKQWVDKKSILFLGYQQFSSIIRDNCNSNASISCQDILLKVPSILILDEGHTPRNENTDIVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMETSKHIARRIKSRIHISGGNDFCELVERTLQTDPDFKRKVAVIHDLREMTGKVLHYYKGDFLDELPGLVDFTVLLNLTPRQKHEVEKIKTKYKKFKMSSVGSAVYLHPKLTPIADKWDENSISDVDRIMDDLIANLDVRDGVKSKFFRNMLNLCESSGEKLLVFSQYLLPLKYLERLAKKWKGWGLDKEIFVISGDSSTEQRERAMENFNNSPDAKIFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEQDHSTCFKKELISKMWFEWNEYCGDRAFEVETVDVKECGDLFLESPLLGEDVKALYKSAEILCSNIAIASTD 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2376g00001 642 CDD SF2_C_SNF 435 563 - -
Trme2376g00001 642 Gene3D - 63 324 IPR038718 -
Trme2376g00001 642 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 627 IPR044567 GO:0080188
Trme2376g00001 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 307 IPR027417 -
Trme2376g00001 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 590 IPR027417 -
Trme2376g00001 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 288 IPR014001 -
Trme2376g00001 642 Gene3D - 358 616 IPR027417 -
Trme2376g00001 642 Pfam Helicase conserved C-terminal domain 443 551 IPR001650 -
Trme2376g00001 642 Pfam SNF2-related domain 115 375 IPR000330 GO:0005524|GO:0140658
Trme2376g00001 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 438 606 IPR001650 -
Trme2376g00001 642 SMART ultradead3 91 298 IPR014001 -
Trme2376g00001 642 SMART helicmild6 467 552 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2376g00001 Trme-Chr2376 3 2681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2376g00001 449 580 RAD5 or RAD16-like Gene Family AT5G43530 37.121 5.57e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme2376g00001 SNF2_N 5.1e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2376g00001 K10875 - gmx:100780454 1052.35