Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme237525g00001 GATGTTCGAGGTATGAAAAGTGACACCAGTAATAGTCACTCAGATACGGAATCTGAAGATGACGAGGATAGGCCAGAGACTCCAGAACCACCAGCTCAACCTCAAAGAACGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACRTAYGGTGTTGTATATAGGGCAAAAGATAAGAAGACCGGGGAAGTTGTAGCATTAAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCGCTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATACATAGTTGATGTCAAGGAAGTAGTGGTTGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACAT 392 0.4107 DVRGMKSDTSNSHSDTESEDDEDRPETPEPPAQPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEVVALKKVKMEKEKEGFPLTSLREINILLSFHHPYIVDVKEVVVGSSLDSIFMVMEY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme237525g00001 130 MobiDBLite consensus disorder prediction 1 37 - -
Trme237525g00001 130 SUPERFAMILY Protein kinase-like (PK-like) 42 130 IPR011009 -
Trme237525g00001 130 FunFam cyclin-dependent kinase G-2 isoform X1 35 130 - -
Trme237525g00001 130 Gene3D Phosphorylase Kinase; domain 1 34 130 - -
Trme237525g00001 130 ProSiteProfiles Protein kinase domain profile. 50 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme237525g00001 130 MobiDBLite consensus disorder prediction 1 18 - -
Trme237525g00001 130 PANTHER CELL DIVISION PROTEIN KINASE 48 130 - -
Trme237525g00001 130 Pfam Protein kinase domain 50 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme237525g00001 Trme-Chr237525 1 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme237525g00001 29 130 Core Cell Cycle Gene Families AT5G10270 45.690 9.36e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trme237525g00001 Pkinase 2.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme237525g00001 K08818 - gmx:100812800 211.075