Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23748g00001 GAAGTTGCTCCTGATAACGAATTTGAGAAGCGAATAAGGCCTGAAGTTATACCAGCAAATGAGATTGATGTCACATTCGCTGATATTGGTGCCTTAGAAGAGACAAAAGAATCCCTTCAAGAGCTAGTAATGCTTCCTCTCCGAAGGCCGGATCTTTTCACCGGAGGACTTCTAAAGCCATGCAGAGGAATATTGCTATTTGGACCTCCTGGAACTGGGAAGACAATGCTAGCAAAGGCCATTGCAAAAGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTTACACTTGCAGCCAAAGTCTCTCCAACTATTATATTTGTCGATGAGGTTGATAGTATGCTTGGACAACGAACAAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGTCTCATTGGGATGGGCTCACGACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACCTGGATGAAGCTATTATAAGGCGATTCGAAAGGAGAATTATGGTAGGACTACCATCTGTTGAGAACAGGGAAAAGATTTTAAGGACACTTTTGGCAAAAGAAAAAGTGGATAAGGAAATTGATTTTAAGGAACTTGCCACCATGACAGAAGGATATACCGGAAGTGATCTAAAGGTTTTTTGTTTAATATTTTCTGACATTGTTTTCAATGGACTTAACTATGTTGCACTACAAGTGCTTTTGTTATATATGAGCTTTTGA 795 0.4025 EVAPDNEFEKRIRPEVIPANEIDVTFADIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDKEIDFKELATMTEGYTGSDLKVFCLIFSDIVFNGLNYVALQVLLLYMSF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23748g00001 264 ProSitePatterns AAA-protein family signature. 167 186 IPR003960 GO:0005524|GO:0016887
Trme23748g00001 264 Gene3D - 24 195 IPR027417 -
Trme23748g00001 264 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 239 - -
Trme23748g00001 264 SMART AAA_5 60 197 IPR003593 GO:0016887
Trme23748g00001 264 Gene3D - 196 239 - -
Trme23748g00001 264 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 23 199 - -
Trme23748g00001 264 Pfam ATPase family associated with various cellular activities (AAA) 64 194 IPR003959 GO:0005524|GO:0016887
Trme23748g00001 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23748g00001 Trme-Chr23748 169 1196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23748g00001 58 240 Calmodulin-binding Proteins AT3G56690 34.946 2.77e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23748g00001 - - gmx:100807464 449.129