Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23739g00001 CCTGCAAGGTGTTACCGTCAAATTAAAAACAAGCCATACCCTAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTACGATGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNGTCAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCTTGCAACAAGTACATGGCAAAATTCGCTGGAAAGGATGCATTCCACTTGAGAGTCAGAGTTCATCCATTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACCGGTATGAGAGGTGCTTTTGG 347 0.3833 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVXXXXXXXXXXXXXXXXVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23739g00001 116 SUPERFAMILY Ribosomal protein L16p/L10e 1 116 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme23739g00001 116 Coils Coil 49 54 - -
Trme23739g00001 116 Gene3D Ribosomal protein L10e/L16 1 116 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trme23739g00001 116 Pfam Ribosomal protein L16p/L10e 8 114 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme23739g00001 116 CDD Ribosomal_L16_L10e 49 116 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trme23739g00001 116 PANTHER 60S RIBOSOMAL PROTEIN L10 1 116 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23739g00001 Trme-Chr23739 938 1284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23739g00001 1 116 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 81.897 2.23e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23739g00001 K02866 - cit:102625379 202.601