Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23727g00001 GCAGCAGCAAACCTTTCAGTGGAGACATTGGAAAAAGGATTGCTTACTCCAAAGAGCAATGTATGGAGTTTTGGAATTGTTCTTCTGGAGCTATTTACTGGTAGAAAGAATTTTGATAGGCAATTCCCAAAGAAAGAGAGGAACTTAGTCAAATGGTGCCGACCTTACCTAGCCGACGATTTCCAGTTGTCAGTGATCATAGATTGTCAACTCAAAGGTCAGTTTTCACTCAAGGCAGCAAGAACATTAGCTAGCATTGTACAAAGATGCCTCCAAAGGGAGCCATCAGAAAGACCAACCATGAGAGCTATTCTTGAGAATCTGAAAACCATACTTGATATGGAGTACCCTAGCTTGTTCCCACTGCAAGAGCCAGCATCCATTTATGGGCGACACATGTCGAGATCACCAACTGTTGGTGGCATCATTAATGCACCTAGATTGGGTTTCTCTCCTTCATTACTACCATCAGCTACCAAAACATCTATTTCACATCCTCGAAGATGGTCTGGTGTGCCCACAAAGCTTCCTTCTCCTCTTGCTTGTTCCTCCGCTGTCTCTACTGAGGAACTCACTAGGCAGGAAAGTACACAGCCATCATCCTCAGTCACCAACAAAGCTTAG 624 0.4423 AAANLSVETLEKGLLTPKSNVWSFGIVLLELFTGRKNFDRQFPKKERNLVKWCRPYLADDFQLSVIIDCQLKGQFSLKAARTLASIVQRCLQREPSERPTMRAILENLKTILDMEYPSLFPLQEPASIYGRHMSRSPTVGGIINAPRLGFSPSLLPSATKTSISHPRRWSGVPTKLPSPLACSSAVSTEELTRQESTQPSSSVTNKA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23727g00001 207 Pfam Protein tyrosine and serine/threonine kinase 5 108 IPR001245 GO:0004672|GO:0006468
Trme23727g00001 207 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23727g00001 207 SUPERFAMILY Protein kinase-like (PK-like) 8 128 IPR011009 -
Trme23727g00001 207 Gene3D Transferase(Phosphotransferase) domain 1 3 118 - -
Trme23727g00001 207 PANTHER OS01G0588500 PROTEIN-RELATED 6 110 - -
Trme23727g00001 207 MobiDBLite consensus disorder prediction 180 207 - -
Trme23727g00001 207 MobiDBLite consensus disorder prediction 159 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23727g00001 Trme-Chr23727 200 823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23727g00001 1 114 Strubbelig Receptor Gene Family AT4G03390 39.474 6.54e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Trme23727g00001 PK_Tyr_Ser-Thr 4.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23727g00001 - - qsa:O6P43_026346 258.84