Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme237161g00001 GTTAAAGACCAACTCAAATCATATTTGGGTAGGCCATGGAAAGAATATGCTAAGACAGTGGTTATGGAATCTAACATTGATGATTTTCTTGCACCAGAAGGGTGGACTCCATGGGAAGGAAATTTGTATCTTAATACATTGTATTATGCTGAATATGCTAATACTGGACCTGGTGCTAATCTTAATGGAAGGATTAAGTGGAAAGGTTATCATCCTAACATTAATAAGAATGAAGCTGCTCAATACACTGCTGAACAATTCCTTAAAGCTGGACCTACTGGAAGAGCTGATGATTGGTTGAAGGCAACTGGTATTCCTTATACAATTGGATTTGAAAAAGCTTGA 345 0.371 VKDQLKSYLGRPWKEYAKTVVMESNIDDFLAPEGWTPWEGNLYLNTLYYAEYANTGPGANLNGRIKWKGYHPNINKNEAAQYTAEQFLKAGPTGRADDWLKATGIPYTIGFEKA 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme237161g00001 114 PANTHER PECTINESTERASE 6 101 - -
Trme237161g00001 114 Gene3D - 1 111 IPR012334 -
Trme237161g00001 114 SUPERFAMILY Pectin lyase-like 4 110 IPR011050 -
Trme237161g00001 114 Pfam Pectinesterase 2 90 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme237161g00001 Trme-Chr237161 1 345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme237161g00001 1 111 Carbohydrate Esterase AT3G14310 47.748 2.12e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme237161g00001 K01051 - gmx:100789650 202.986