Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme237064g00001 ATGGTTGGCATGGGACAAAAGGATGCATATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATATTGACTCTAAAATATCCAATTGAGCATGGTATTGTGAATAACTGGGATGACATGGAGAAGATTTGGCATCATACCTTCTACAATGAACTCCGCGTGGCCCCTGAGGAGCACCCGGTTTTGCTCACCGAAGCACCTCTCAACCCAAAGGCTAATCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTATCGCTATATGCTAGTGGTC 310 0.4581 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme237064g00001 103 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Trme237064g00001 103 FunFam Actin, alpha skeletal muscle 1 102 - -
Trme237064g00001 103 SUPERFAMILY Actin-like ATPase domain 2 103 IPR043129 -
Trme237064g00001 103 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Trme237064g00001 103 Pfam Actin 7 103 IPR004000 -
Trme237064g00001 103 CDD NBD_sugar-kinase_HSP70_actin 31 103 - -
Trme237064g00001 103 PRINTS Actin signature 97 103 IPR004000 -
Trme237064g00001 103 PRINTS Actin signature 6 17 IPR004000 -
Trme237064g00001 103 PRINTS Actin signature 18 40 IPR004000 -
Trme237064g00001 103 PRINTS Actin signature 72 85 IPR004000 -
Trme237064g00001 103 Gene3D - 1 103 - -
Trme237064g00001 103 PANTHER ACTIN 8 103 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme237064g00001 Trme-Chr237064 8 317 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme237064g00001 1 103 Cytoskeleton Gene Families AT5G59370 100.000 1.55e-73 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme237064g00001 K10355 - gmx:100813210 215.312