Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme236369g00001 ATGCTTGGGACAAGAGGAACTATAGGCTACATAGCACCAGAAGTATTTAGTCGAGCATTCGGTGGAGTTTCTTCTAAATCTGATGTATACAGTTATGGTATGTTGATTCTTGAAATGACGGGAGGAAGAAAGAATTATGACATTGGAGGATCTCATACGACCGAAATGTACTTTCCAGATTGGATATATAAGGATCTTGAGCAAG 205 0.3902 MLGTRGTIGYIAPEVFSRAFGGVSSKSDVYSYGMLILEMTGGRKNYDIGGSHTTEMYFPDWIYKDLEQ 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme236369g00001 68 Gene3D Transferase(Phosphotransferase) domain 1 1 68 - -
Trme236369g00001 68 SUPERFAMILY Protein kinase-like (PK-like) 3 58 IPR011009 -
Trme236369g00001 68 ProSiteProfiles Protein kinase domain profile. 1 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme236369g00001 68 Pfam Protein tyrosine and serine/threonine kinase 5 46 IPR001245 GO:0004672|GO:0006468
Trme236369g00001 68 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 68 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme236369g00001 Trme-Chr236369 115 319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme236369g00001 1 68 Receptor kinase-like Gene Family AT4G18250 61.429 1.44e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme236369g00001 PK_Tyr_Ser-Thr 5.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme236369g00001 - - psat:127126843 129.798