Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23596g00001 ATGAAATTTTTGAATGCAACCACATGTATCGGTGTTGGACACTGGACATGCCTTCACGGTGAAATGTCTGTGCTACATAGATACCCAGCTAATATTACACTTCTACGTGGAAACCATGAAAGTAGACAACTCACACAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATACTGTACCGATGTTTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTGCTTTGTGTTCACGGCGGCCTTTCTCCAGACATACGAACAATTGACCAG 300 0.4133 MKFLNATTCIGVGHWTCLHGEMSVLHRYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQ 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23596g00001 100 Gene3D - 13 100 IPR029052 -
Trme23596g00001 100 ProSitePatterns Serine/threonine specific protein phosphatases signature. 35 40 IPR006186 GO:0016787
Trme23596g00001 100 Pfam Calcineurin-like phosphoesterase 16 95 IPR004843 GO:0016787
Trme23596g00001 100 PRINTS Serine/threonine phosphatase family signature 34 58 IPR006186 GO:0016787
Trme23596g00001 100 PRINTS Serine/threonine phosphatase family signature 69 95 IPR006186 GO:0016787
Trme23596g00001 100 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 26 100 IPR047129 GO:0004722
Trme23596g00001 100 SUPERFAMILY Metallo-dependent phosphatases 25 100 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23596g00001 Trme-Chr23596 55 1155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23596g00001 29 91 Calmodulin-binding Proteins AT5G63870 46.154 7.94e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23596g00001 K15498 - atr:18438403 160.614