Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme235958g00001 CCACCTTCTAACACCAAACTCAAACCACTCGCTTCCAAGCCCATCAAAGCCCAACCACAGGTCCAATCCTCAGCCCAAGCCCAAACCACGCCTAAATCTGGGAAAAAACGTGTTGCCGACGACATCAACGCGAACGGAAATACCATAAAACGTTCCAAAGGCAAAGAAACTGTTTCTGCCGCTGCTGGTGGTTCTGGTGGTAGAATCTTCAGTGAAGAAGATGAACTTGCTATTCTGAGAGGTGTTGCTGACTTCCTTTCCAAAACTGGAAAGGATCCTTTGAAAAATATAGCTGCTTTTCACGGTTTTGTGAAGAAATCGCTTGGTGCTACG 333 0.4655 PPSNTKLKPLASKPIKAQPQVQSSAQAQTTPKSGKKRVADDINANGNTIKRSKGKETVSAAAGGSGGRIFSEEDELAILRGVADFLSKTGKDPLKNIAAFHGFVKKSLGAT 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme235958g00001 111 MobiDBLite consensus disorder prediction 16 33 - -
Trme235958g00001 111 MobiDBLite consensus disorder prediction 1 66 - -
Trme235958g00001 111 Pfam Protein of unknown function, DUF573 68 108 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme235958g00001 Trme-Chr235958 61 393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme235958g00001 16 108 GeBP Transcription Factor Family AT1G61730 38.710 4.23e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trme235958g00001 DUF573 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme235958g00001 - - tpra:123884067 157.532