Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23587g00001 GCTTATGATAATGAAGAGACTGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATTATTAATTTTCCGTTATCAAACTATCAGAAAGAACTGATTGAAATGGAGAGTCAATCAAGGGAGGAATATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCTAGGGGAGTTTCTAAATATAGAGGTGTTGCAAGACATCATCATAATGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAACAAGTATCTTTATCTTGGAACCTATGGTAAGTTCAAAATCATCATGTCTCAAATTCTCACACCAATTCTTTTGTTGACAAAATGA 348 0.3649 AYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYGKFKIIMSQILTPILLLTK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23587g00001 115 SUPERFAMILY DNA-binding domain 64 98 IPR016177 GO:0003677
Trme23587g00001 115 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 97 - -
Trme23587g00001 115 Pfam AP2 domain 64 98 IPR001471 GO:0003700|GO:0006355
Trme23587g00001 115 Gene3D AP2/ERF domain 1 31 IPR036955 GO:0003700|GO:0006355
Trme23587g00001 115 Gene3D AP2/ERF domain 64 100 IPR036955 GO:0003700|GO:0006355
Trme23587g00001 115 SUPERFAMILY DNA-binding domain 2 31 IPR016177 GO:0003677
Trme23587g00001 115 ProSiteProfiles AP2/ERF domain profile. 1 29 IPR001471 GO:0003700|GO:0006355
Trme23587g00001 115 ProSiteProfiles AP2/ERF domain profile. 65 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23587g00001 Trme-Chr23587 193 817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23587g00001 1 96 AP2-EREBP Transcription Factor Family AT3G54320 80.208 5.07e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme23587g00001 AP2 9.8e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23587g00001 K09285 - sind:105155867 190.66