Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme235815g00001 GCCCGTGGCATTGAGTACCTTCATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAATATCCTCTTAACCAAGTCATATGATGCAAGAGTGTCTGATTTTGGGCTTTCACAGCTTGTTGGCCCCTCCTCTACCCCAAACCGTGTTGCCGGGTACCGTGCGCCAGAAGTAACTGATCCTCGCAAAGTGTCTCAAAAGGCAGATGTGTACAGTTTTGGCGTATTGCTCTTAGAACTTCTGACTGGGAAGGCACCTACACATGCTCTTCTAAATGAAGAAGGTGTAGATCTCCCCAGATGGGTTCAGTCAGTGGTTAGAGAAGAGTGGACTTCTGAAGTGTTTGATCTTGAGCTCCTTAG 368 0.4701 ARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLSQLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme235815g00001 122 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 1 122 - -
Trme235815g00001 122 ProSiteProfiles Protein kinase domain profile. 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme235815g00001 122 SUPERFAMILY Protein kinase-like (PK-like) 1 111 IPR011009 -
Trme235815g00001 122 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Trme235815g00001 122 Pfam Protein kinase domain 2 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme235815g00001 Trme-Chr235815 28 395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme235815g00001 1 122 Receptor kinase-like Gene Family AT1G48480 76.423 2.19e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme235815g00001 Pkinase 4.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme235815g00001 - - twl:119987405 239.195