Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23499g00001 CAGCTATTACAGAACTTTTTCAACGGGAAGGAATTATGCAAAAGCATCAATCCTGATGAGGCTGTTGCATATGGTGCAGCTGTTCAGGCTGCATTGCTTAGCGACGGCGTTAAGAGTGTTCCAAACTTGATTTTGCAAGATGTTACGCCATTGTCTCTTGGTANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAATTGATGTTTATGAGGGAGAGAGAATGGTTGCGAGTGAGAACAACTTGCTTGGTTTGTTTAATCTCTCAGTTCGTTGTGCACCTCGTGGACTTCCTTTCCAGGTATGCTTTACTATAGATGTTGATGGTATATTAAACGTCTCTGCGGAGGAAGAAAGCAGTGGTAATAAGAAAGATATTACAATAACTAATGAAAATGGAAGACTTTCAAGAGAAGAAATTGAGAGAATGATTCAAGAAGCTGAATATTTTAAGGCTCAAGACATAAAGTTCAAGGAGAAAGTTAAAGCAATAAATGCATTGGACGRTTATCTTTATAATGTGACGAAAGTTATGAAGGATGATAGTGTTACTTTAAAGCTCACCCCTATAGACAAAGAGATGATAAATTCTGCAATGATAAAGGGACAAAGTTTGATTGATGGCAACCGGCAGGAAGATACATCTGTGTTTGTGGATATTTTGAAGGAACTTGAGAGAGTCTTTGAATCTGCTATGAACAAGATCAACAAAGGTTACTCTGATTAG 801 0.3258 QLLQNFFNGKELCKSINPDEAVAYGAAVQAALLSDGVKSVPNLILQDVTPLSLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDVYEGERMVASENNLLGLFNLSVRCAPRGLPFQVCFTIDVDGILNVSAEEESSGNKKDITITNENGRLSREEIERMIQEAEYFKAQDIKFKEKVKAINALDXYLYNVTKVMKDDSVTLKLTPIDKEMINSAMIKGQSLIDGNRQEDTSVFVDILKELERVFESAMNKINKGYSD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23499g00001 266 PANTHER HEAT SHOCK PROTEIN 70KDA 1 218 IPR013126 GO:0005524|GO:0140662
Trme23499g00001 266 SUPERFAMILY Actin-like ATPase domain 1 34 IPR043129 -
Trme23499g00001 266 Gene3D - 160 263 IPR029048 -
Trme23499g00001 266 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 86 158 IPR029047 -
Trme23499g00001 266 Gene3D - 1 13 - -
Trme23499g00001 266 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 39 193 IPR029047 -
Trme23499g00001 266 Coils Coil 92 98 - -
Trme23499g00001 266 Pfam Hsp70 protein 2 259 IPR013126 GO:0005524|GO:0140662
Trme23499g00001 266 Gene3D - 14 31 - -
Trme23499g00001 266 PRINTS 70kDa heat shock protein signature 121 137 - -
Trme23499g00001 266 PRINTS 70kDa heat shock protein signature 42 61 - -
Trme23499g00001 266 PRINTS 70kDa heat shock protein signature 16 36 - -
Trme23499g00001 266 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 188 262 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23499g00001 Trme-Chr23499 2 802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23499g00001 1 263 Calmodulin-binding Proteins AT3G12580 48.120 4.22e-70 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23499g00001 K03283 - twl:119989252 226.098