Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23492g00001 TATTTCCTTGAGGCATATCGTCCAGTTAGGAAGGGGGATATGTTCCTTGTTAGAGGGGGGATGAGAAGTGTGGAATTCAAGGTTATTGAATGTGACCCTGCTGAGTATTGTGTGGTTGCACCTGACACTGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGGATAGGTTAGATGAGGTTGGTTACGATGATGTTGGTGGAGTTAGAAAACAGATGGCTCAGATTCGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTATTCAAGTCTATTGGTGTGAAGCCACCAAAAGGTATTTTGTTGTATGGACCCCCTGGATCTGGGAAAACTTTAATTGCACGAGCTGTTGCAAATGAAACTGGTGCTTTCTTTTTCTGCATCAATGGTCCTGAGATCATGTCAAAGCTGGCTGGTGAGAGTGAAAGTAACCTGAGGAAGGCATTTGAAGAAGCTGAGAAGAATGCTCCTTCAATCATCTTCATTGATGAAATAGACTCCATTGCTCCAAAGCGGGAGAAGACAAATGGGGAAGTTGAGAGGAGGATTGTTTCCCAGCTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCACATGTTATTGTTATTGGAGCAACAAATCGTCCCAATAGCATTGACCCTGCTCTTCGTAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTACCAGATGAAGTTGGACGTCTTGAGGTTCTTCGCATCCATACAAAAAATATGAAGCTTTCAGAAGATGTTGATTTAGAAAAGATTGCTAAGGAAACCCATGGTTATGTTGGTGCTGATTTAGCTGCTTTGTGTACTGAAGCTGCACTTCAGTGCATCAGAGAGAAAATGGATGTGATTGACCTAGAAGATGAAACCATTGATGCTGAGATATTGAACTCAATGGCAGTCACAAATGAACATTTCCAGACTGCACTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTAAGTATT 996 0.4317 YFLEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCVVAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGSSNPSALRETVSI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23492g00001 332 FunFam Cell division control 48 234 325 - -
Trme23492g00001 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 325 IPR027417 -
Trme23492g00001 332 PANTHER AAA-FAMILY ATPASE 59 325 - -
Trme23492g00001 332 Pfam Cell division protein 48 (CDC48), domain 2 7 53 IPR004201 -
Trme23492g00001 332 FunFam Transitional endoplasmic reticulum ATPase 64 232 - -
Trme23492g00001 332 Pfam AAA+ lid domain 255 297 IPR041569 -
Trme23492g00001 332 Pfam ATPase family associated with various cellular activities (AAA) 103 232 IPR003959 GO:0005524|GO:0016887
Trme23492g00001 332 Gene3D - 234 328 - -
Trme23492g00001 332 SMART AAA_5 99 235 IPR003593 GO:0016887
Trme23492g00001 332 ProSitePatterns AAA-protein family signature. 203 221 IPR003960 GO:0005524|GO:0016887
Trme23492g00001 332 FunFam Cell division control 48 1 67 - -
Trme23492g00001 332 CDD RecA-like_CDC48_r1-like 67 232 - -
Trme23492g00001 332 Gene3D - 68 232 IPR027417 -
Trme23492g00001 332 SUPERFAMILY Cdc48 domain 2-like 1 62 IPR029067 -
Trme23492g00001 332 Gene3D - 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23492g00001 Trme-Chr23492 208 1288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23492g00001 62 315 Calmodulin-binding Proteins AT3G56690 45.455 8.65e-67 224