Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23491g00001 GCTTTGAAACTTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTAATTGCTTTGAAGTTTATGTACATTCCTGA 177 0.4011 ALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGNCFEVYVHS 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23491g00001 58 Pfam JmjC domain, hydroxylase 4 56 IPR003347 -
Trme23491g00001 58 ProSiteProfiles JmjC domain profile. 1 58 IPR003347 -
Trme23491g00001 58 Gene3D Cupin 1 57 - -
Trme23491g00001 58 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 50 - -
Trme23491g00001 58 SUPERFAMILY Clavaminate synthase-like 7 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23491g00001 Trme-Chr23491 240 584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23491g00001 1 53 C2H2 Transcription Factor Family AT5G04240 85.185 2.51e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme23491g00001 JmjC 6.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23491g00001 - - lja:Lj5g3v1811440.1 105.145