Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme234787g00001 GAAAAGCCGAAAGAAGAGTTTGGAAGTGGAGTTCAAGAATCTGAGAAAAACAAATTGGTTTTCTTTGAGGGCTGCTCTTATAACTTTGATCTTGAGGATTTGTTGAGGGCTTCTGCCGAGGTTCTCGGAAAAGGTAGTTACGGTACTGCATATAAGGCTATTTTGGAAGAGTTAACGACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGCAAGAGGGAATTTGAACAGCAGATGGAGATTATAGGAAGCATTGGAAGTCACCCGAATGTCGTTCCGCTTCGCGCTTATTATTATTCGAAGGATGAGAAGCTTTTGGTTTGTGACTATTACCCAAATGGCAATCTATCTATACTCTTGCATG 367 0.4087 EKPKEEFGSGVQESEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEELTTVVVKRLKEVVVGKREFEQQMEIIGSIGSHPNVVPLRAYYYSKDEKLLVCDYYPNGNLSILLH 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme234787g00001 122 PANTHER OS05G0588300 PROTEIN 10 122 - -
Trme234787g00001 122 FunFam pollen receptor-like kinase 1 4 111 - -
Trme234787g00001 122 SUPERFAMILY Protein kinase-like (PK-like) 40 121 IPR011009 -
Trme234787g00001 122 ProSitePatterns Protein kinases ATP-binding region signature. 42 73 IPR017441 GO:0005524
Trme234787g00001 122 Gene3D Phosphorylase Kinase; domain 1 4 111 - -
Trme234787g00001 122 ProSiteProfiles Protein kinase domain profile. 36 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme234787g00001 122 Pfam Protein tyrosine and serine/threonine kinase 40 121 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme234787g00001 Trme-Chr234787 3 369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme234787g00001 1 122 Receptor kinase-like Gene Family AT5G58300 86.885 3.99e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme234787g00001 PK_Tyr_Ser-Thr 1.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme234787g00001 - - qsa:O6P43_020472 214.927