Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23475g00001 ATGGGAAGGAGTAAGGTACAGCTAAAACGGATCGAGAACAAGATCAATCGACAGGTAACTTTCTCAAAAAGGAGAACCGGTTTGCTCAAGAAAGCTAATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTATCTTCTCTCATAATGGAAAGCTCTTTGAGTATTCAACTGATTCATG 185 0.3838 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSHNGKLFEYSTDS 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23475g00001 61 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Trme23475g00001 61 FunFam MADS-box transcription factor MADS-MC 13 61 - -
Trme23475g00001 61 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Trme23475g00001 61 Gene3D - 13 61 IPR036879 GO:0003677|GO:0046983
Trme23475g00001 61 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trme23475g00001 61 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23475g00001 Trme-Chr23475 636 820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23475g00001 1 61 MADS-box Gene Family AT1G26310 85.246 2.04e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme23475g00001 SRF-TF 2.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23475g00001 K09264 - pop:7468138 114.005