Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23440g00001 ATGATGACTGCCGAAACAGGAACATATCGATGGATGGCTCCAGAACTTTACAGTACTGTTACCCTAAGACAAGGTGAGAAGAAGCATTACAACCATAAAGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAACAAGTTACCCTTTGAAGGCATGTCTAATTTACAGGCAGCATATGCTGCTGCTTTTAAGAATACAAGGCCTAGTGCTGAAGATCTACCAGAGGATTTAGCTATGATTGTAACATCATGCTGGAGAGAGGATCCAAATGATCGACCGAATTTTAGTCAAATTATACAGATGCTCCTTCGGTATCTCTCTACCATTTCGCCATCAGAACCGGTCGTTCCRATGMGGATTRMTTCATCYGRTAATATTGTATTGCCACCAGAATCTCCCGGTACAAGTGCATTAATGTTTCGACGAGATGACTCTGGAGAAACACCAAAAGCCAATGCGGAAGAGAGGTTCAAAGGGTATTTCTTCTGCTTCAACCAGTGTTACTAA 519 0.42 MMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLAMIVTSCWREDPNDRPNFSQIIQMLLRYLSTISPSEPVVPMRIXSSXNIVLPPESPGTSALMFRRDDSGETPKANAEERFKGYFFCFNQCY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23440g00001 172 ProSiteProfiles Protein kinase domain profile. 1 110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23440g00001 172 SUPERFAMILY Protein kinase-like (PK-like) 2 133 IPR011009 -
Trme23440g00001 172 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Trme23440g00001 172 Pfam Protein tyrosine and serine/threonine kinase 6 106 IPR001245 GO:0004672|GO:0006468
Trme23440g00001 172 PANTHER SERINE-THREONINE PROTEIN KINASE 2 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23440g00001 Trme-Chr23440 23 1286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23440g00001 1 172 MAP Kinase Kinase Kinase AT5G50180 75.581 7.87e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme23440g00001 PK_Tyr_Ser-Thr 2.2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23440g00001 - - qsa:O6P43_004699 315.464