Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2343g00001 ATGGGTTCGCTCGATGCACCAATCAGTGCGGAAAACGGCACCGTTCCGGCCGCCGGCCACGGCAAATCTCCGTTAACCGATGGAGGCATACGCCCCCCGCCGTCAGATTCGGTACCGGAGTACGAAGCATCTAAGCGGCGGAGATCGTCTGTGCTTCCCCTGGAAGTTGGGACGCGCGTGATGTGCCGTTGGAGAGACGGGAAGTATCATCCTGTCAAAGTCATCGAACGTCGCAGAGTTCATGGCTGTGGACCCAACGATTATGAGTATTACGTTCATTATACTGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGACCAGCTCGATCTTGATTCTGTGGAGGCAGTTGTTGATGAGAAAGTGGAGGAGAAGGATTTACCTTATCCCTTTGGCCAGTCCAGTTGCTCTTTAGCATCTCAAGAATTTGCGCTGTTCATAAAACATAAAAAGAGTAGGCGTCTAGGTTTGCGCAAATGA 483 0.5135 MGSLDAPISAENGTVPAAGHGKSPLTDGGIRPPPSDSVPEYEASKRRRSSVLPLEVGTRVMCRWRDGKYHPVKVIERRRVHGCGPNDYEYYVHYTEFNRRLDEWVKLDQLDLDSVEAVVDEKVEEKDLPYPFGQSSCSLASQEFALFIKHKKSRRLGLRK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2343g00001 160 CDD CBD_MOF_like 57 126 - -
Trme2343g00001 160 Gene3D - 43 155 - -
Trme2343g00001 160 SMART chromo_7 68 127 IPR000953 -
Trme2343g00001 160 MobiDBLite consensus disorder prediction 1 44 - -
Trme2343g00001 160 Pfam RNA binding activity-knot of a chromodomain 54 112 IPR025995 -
Trme2343g00001 160 SUPERFAMILY Chromo domain-like 50 125 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2343g00001 Trme-Chr2343 722 2183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2343g00001 1 126 C2H2 Transcription Factor Family AT5G09740 58.209 5.45e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2343g00001 K11308 - gmx:100819116 187.578