Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23438g00001 GTAGAAGATACACCATTATCTGTTTTGCATATTCAGTATCCCGAGTGGCCTGACCATGGAGTTCCAAATGATACTTTAGCTGTGCGTGAAATTTTGAAAAGATTGTACCATTTACCACCAAACCTTGGCCCAATAGTGGTGCACTGCAGGTATCGGTAG 159 0.4277 VEDTPLSVLHIQYPEWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCRYR 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23438g00001 52 PRINTS Protein tyrosine phosphatase signature 44 52 IPR000242 GO:0004725|GO:0006470
Trme23438g00001 52 PRINTS Protein tyrosine phosphatase signature 6 23 IPR000242 GO:0004725|GO:0006470
Trme23438g00001 52 ProSiteProfiles PTP type protein phosphatase domain profile. 1 52 IPR000242 GO:0004725|GO:0006470
Trme23438g00001 52 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 6 49 - -
Trme23438g00001 52 Pfam Protein-tyrosine phosphatase 5 50 IPR000242 GO:0004725|GO:0006470
Trme23438g00001 52 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 50 IPR029021 -
Trme23438g00001 52 Gene3D Protein tyrosine phosphatase superfamily 1 51 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23438g00001 2 49 Protein tyrosine phosphatase (PTP) family AT1G71860 83.333 3.16e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23438g00001 - - tpra:123902985 105.916