Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme234182g00001 ATGCAAATTTTACATTTTGATATTAAGCCTCATAACATCCTTCTTGACGAAAATTTCATCCCCAAAGTTTCGGACTTCGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATCGTCACTTTGACAGCAGCCAGAGGAACAATTGGGTACATGGCTCCTGAATTGTTCTACCAAAATATCGGAGGAATATCATACAAGGCTGATGTGTATAGCTTCGGAATGCTTTTGATAGAAATGACAA 241 0.3817 MQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEMT 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme234182g00001 80 ProSitePatterns Serine/Threonine protein kinases active-site signature. 3 15 IPR008271 GO:0004672|GO:0006468
Trme234182g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 2 79 IPR011009 -
Trme234182g00001 80 Gene3D Transferase(Phosphotransferase) domain 1 1 80 - -
Trme234182g00001 80 Pfam Protein kinase domain 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme234182g00001 80 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 79 IPR045874 GO:0004672
Trme234182g00001 80 ProSiteProfiles Protein kinase domain profile. 1 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme234182g00001 Trme-Chr234182 81 321 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme234182g00001 2 79 Receptor kinase-like Gene Family AT4G18250 60.256 1.23e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme234182g00001 Pkinase 1.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme234182g00001 - - tpra:123912890 160.614