Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme233548g00001 ATGGTTCAACGGTCAGACCGGTTGGTTCACGGTTCATCCGGTCAGACTGGCCAGTTCACCGAGAAAGACCATATGTTATCTGGACGCCTCCTTACAGCTCATGGTTACAGTGCTCCAGAATTTGAGTTGGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTCGGAGTCGTAATGCTAGAACTCCTCACTGGACGAAAATCCTATGACAG 212 0.4764 MVQRSDRLVHGSSGQTGQFTEKDHMLSGRLLTAHGYSAPEFELGSYTQQSDVFSFGVVMLELLTGRKSYD 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme233548g00001 70 PANTHER OS01G0253100 PROTEIN 25 70 - -
Trme233548g00001 70 ProSiteProfiles Protein kinase domain profile. 1 70 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme233548g00001 70 MobiDBLite consensus disorder prediction 1 22 - -
Trme233548g00001 70 SUPERFAMILY Protein kinase-like (PK-like) 26 69 IPR011009 -
Trme233548g00001 70 Gene3D Transferase(Phosphotransferase) domain 1 1 70 - -
Trme233548g00001 70 Pfam Protein tyrosine and serine/threonine kinase 33 69 IPR001245 GO:0004672|GO:0006468
Trme233548g00001 70 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme233548g00001 Trme-Chr233548 30 371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme233548g00001 12 70 Strubbelig Receptor Gene Family AT4G03390 66.102 1.70e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trme233548g00001 PK_Tyr_Ser-Thr 2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme233548g00001 - - gmx:100793423 92.4337