Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme233431g00001 CTGACTACTAGAGACGATACCTTGTACTTCACGAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCNTTAAATACAAGGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTATGTGAGAAAACAGCTTCTTATTTTGTCGGAAAATGTGGACATGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGACACAAACACTTGTGCTGAAGAAGTCATCAATCCTGCTTCGAATGGTGGTGTAGAAACGCCATCAGTTGTACCTTTTGGAACTACCAATGGAAAGACTGGTAATGCTGGTGTCGAACCTGCTTCCCCTGAGAAATTAACGGCTGATGCACTCACTAAGACCACAACTATACAG 396 0.4192 MTTRDDTLYFTNGWQQFVKDHSLKENDFLVXKYKGESHFEVLIFDGESLCEKTASYFVGKCGHAQTEQGGSKAKDTNTCAEEVINPASNGGVETPSVVPFGTTNGKTGNAGVEPASPEKLTADALTKTTTIQ 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme233431g00001 132 Pfam B3 DNA binding domain 5 45 IPR003340 GO:0003677
Trme233431g00001 132 ProSiteProfiles B3 DNA-binding domain profile. 1 47 IPR003340 GO:0003677
Trme233431g00001 132 Gene3D - 1 50 IPR015300 -
Trme233431g00001 132 MobiDBLite consensus disorder prediction 84 132 - -
Trme233431g00001 132 CDD B3_DNA 4 45 IPR003340 GO:0003677
Trme233431g00001 132 PANTHER B3 DOMAIN-CONTAINING 4 85 - -
Trme233431g00001 132 MobiDBLite consensus disorder prediction 84 110 - -
Trme233431g00001 132 SUPERFAMILY DNA-binding pseudobarrel domain 3 45 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme233431g00001 Trme-Chr233431 3 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme233431g00001 5 69 REM Transcription Factor Family AT4G33280 61.538 1.45e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme233431g00001 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme233431g00001 - - tpra:123885982 231.491