Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23332g00001 AAACGTAGAGCTCAGAGGAATCCTCCACAACCAATTGTTCTTGATCTAGATGATGAAGAAACTCCCAAAAAGGATAGTGGGAAAAAGAAGAAAGAAAAGAAAGTTTGTGTTACTGAAGAAAATAAAGTTAAAGAAAAGGAATTGACTCAAAAGGGTATTGATGTCAATTCAACTAGTTCTTCTACTCTTCCTTGTATGGATAAGCTGAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCTAAGTGTAGGCAATTGATAAGCAATGGACGATCGTGCACCGTGAACACGGTTCTTTGGAACACAATTCAACTCCTATTTCCTCAAGAAATTGAAGCAAGGAAAGCAGCTGCTGTCACTGCGAATAATAGACAAGCACCAGCTCAGAATCCGATTCCAGAAACAACATTTTACAATAACCAA 513 0.3899 KRRAQRNPPQPIVLDLDDEETPKKDSGKKKKEKKVCVTEENKVKEKELTQKGIDVNSTSSSTLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAAVTANNRQAPAQNPIPETTFYNNQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23332g00001 171 ProSiteProfiles Zinc finger RING-type profile. 75 114 IPR001841 -
Trme23332g00001 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 144 IPR013083 -
Trme23332g00001 171 MobiDBLite consensus disorder prediction 16 33 - -
Trme23332g00001 171 Pfam Zinc finger, C3HC4 type (RING finger) 75 113 IPR018957 GO:0046872
Trme23332g00001 171 MobiDBLite consensus disorder prediction 1 33 - -
Trme23332g00001 171 SMART ring_2 75 113 IPR001841 -
Trme23332g00001 171 PANTHER UNCHARACTERIZED 17 168 - -
Trme23332g00001 171 SUPERFAMILY RING/U-box 67 138 - -
Trme23332g00001 171 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23332g00001 37 135 C2H2 Transcription Factor Family AT5G39550 31.373 1.52e-06 45.4