Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2332g00001 ATGGGTTCCAGCAGCGGGTCTTCAGCTCCGTTGACGACATTATCGCCAAGGAAATATGATGTGTTTGTGAGTTTCTATGGTGATGACACACGCAAAAATTTCACCGATCATCTTTTTGGCGCCCTTAAAAGAAAAAACATAGTCGCATTCCGGGATAATAGACATCTCAACGGTGGTGAACCTATAGCACCCGGACTCTTTCGTGCAATTGAAGGGTCTCAGATTTTCATCGTGGTATTCTCTAAGAACTATGCAGACTCAACTTGGTGCTTGCGTGAATTGGAACACATCTTTCTTCACCGCGGTCAACCATCGGAAAAACGTGTTTGGACATTTTTCTATGATGTCGATCCATCTGTGGTGCGAAAGCAAAGTGACAGTTATCAAATAGCCTTTGCCAAACACGAAACAAATCCCAATATCGACATAGAGATGCTGTATAGATGGAAGCTAGTTCTGACACAAGCGGCCAATATCACTGGATGTGATCTACTTCATAAGTCACAGTATGCAGCGATTGAAAAGTTTGTTCAAGAGATAGTAGATATGTTTGGTTACAATTTTTCATATCGTCCAAATGATTTAGTTGGAATGCTTTCTCCTATAGAAGAACTGGAAAAGCTTTTACTTTTGGACTCTGTCGATAATGTTCGGACAGTTGGAATTTATGGGATGAGTGGAGTAGGGAAGACAACTCTTGCTTCTGTTTTATATGGCAAAATGAAAAACTCTCCTCAATTTGACGCATGTTGTTTCATTGATGATGTAAGCAAAAGTTTTAGACAATATGGTCCATTTGATGTACAAAAGCAAATTCTACATCAAATTCTAGGCGAAGAACACAACCAGATATTCAATCTTTACGATGCAGCTAATTTGATGCAAAGTAGGCTATGTCGCCATAGGGTTCTTATAATTTTTGATAATGTTGATCACAATGAACAATTGGAGAAACTAGCCTTGAATCGTAAACTGTTAGCTGCAGGGAGTAGAATCATTGTAGTTTGTAGAGATCTTCATGTCTTGAAAGAGTATAGAATGGATGAATTTTACGAAGTTCCACTCTTGAGTGACGAAAACTCTTTTCAATTATTTTGTCAAAAAGCTTTTGAAGATCATATTGACAGTGATTATGAGGAGTTGACATATGCCATACTAAATTATGCTAATGGCCTACCACTAGCGATAAAAGTGTTAGGTTCATTTTTGTTCAGTCGATGTGTCTCTGAGTGGACAAGTGCATTGGCTAGATTGAGAGAAAATCCAAACAAAGATATTATGGATGCATTGAAGTTTAGTTTTTATGGGCTAGAGGATAAGGAAAAAGAAATATTTCTTGACATTGCTTGTTTTTTCAACATGAGTGAGGAAAAAACCGTTAAAAATATTTTAAATTGTTGTGGGTTTCATCCTGATATTGGATTAAGAGTCCTCATTGATAAATCACTTATAAGCATTTCGAAAGAAAGTAAGGTTGAAATGCATGGCTTGTTGGAAGAGCTTGGTAGAAAAATTGTTCAACAAAACTCAACTGAAGAGGCAAGAAAGTGGAGTAGGGTGTGGCTCCATAAACATTGCTCAGATGTTATGTCAGAGAATATGGAAAAAAATGTTGAAGCCATAGTTTTGAAGGGAAATGCACAAGATACAAAAAAATTGACGGCTGAAGCATTGTCAACTATGTTTCGTCTTAGATTGCTCAAACTCGAGGATGTTGAAGTTCTAGGAAACCTCACCAATCTATCTAATCAACTAAGATACGTTGCATGGGATGGATATCCTTTCATGCATTTGCCAACAAGTTTTCAACCCAATCACCTGGTTGAATTGATCTTGAAATATAGCAACATCGAACAACTATGGAATGACAAGAAGATAAATCTTCCTAATTTGAGGACTCTGGATCTAAGCTTCTCCGAAAATCTAATGACGATGTCAGATTTTGGAGTGGTCCCAAACCTTGAGCGGCTAAACCTTGAAGGATGTATAAAACTTGTGGAGATGAATCTATCTACTGGTCTTCCAAAGAAGCTCGTTTTCATGAATTTGAAAAATTGCATAAGTCTTAAATGCATACCCAATGGCATATCTGGTCTCAACTCTCTTGAATATTTAAATCTTTGCAGTTGTTCTGAAGCGTTTAACAATCCAAGGGATTTGGAGTTTCCTTCCTTGGCGAGCTTTGATGGTTTGCGTGAAGTTGATATTAGTTTTTGCAGTCTAAGCCATCTCCCTGGAGACATTGGAGGTCTAAGG 2256 0.3777 MGSSSGSSAPLTTLSPRKYDVFVSFYGDDTRKNFTDHLFGALKRKNIVAFRDNRHLNGGEPIAPGLFRAIEGSQIFIVVFSKNYADSTWCLRELEHIFLHRGQPSEKRVWTFFYDVDPSVVRKQSDSYQIAFAKHETNPNIDIEMLYRWKLVLTQAANITGCDLLHKSQYAAIEKFVQEIVDMFGYNFSYRPNDLVGMLSPIEELEKLLLLDSVDNVRTVGIYGMSGVGKTTLASVLYGKMKNSPQFDACCFIDDVSKSFRQYGPFDVQKQILHQILGEEHNQIFNLYDAANLMQSRLCRHRVLIIFDNVDHNEQLEKLALNRKLLAAGSRIIVVCRDLHVLKEYRMDEFYEVPLLSDENSFQLFCQKAFEDHIDSDYEELTYAILNYANGLPLAIKVLGSFLFSRCVSEWTSALARLRENPNKDIMDALKFSFYGLEDKEKEIFLDIACFFNMSEEKTVKNILNCCGFHPDIGLRVLIDKSLISISKESKVEMHGLLEELGRKIVQQNSTEEARKWSRVWLHKHCSDVMSENMEKNVEAIVLKGNAQDTKKLTAEALSTMFRLRLLKLEDVEVLGNLTNLSNQLRYVAWDGYPFMHLPTSFQPNHLVELILKYSNIEQLWNDKKINLPNLRTLDLSFSENLMTMSDFGVVPNLERLNLEGCIKLVEMNLSTGLPKKLVFMNLKNCISLKCIPNGISGLNSLEYLNLCSCSEAFNNPRDLEFPSLASFDGLREVDISFCSLSHLPGDIGGLR 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2332g00001 752 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 161 IPR035897 -
Trme2332g00001 752 SUPERFAMILY L domain-like 552 751 - -
Trme2332g00001 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 448 IPR027417 -
Trme2332g00001 752 Pfam Leucine Rich Repeat 606 624 IPR011713 -
Trme2332g00001 752 Gene3D - 355 438 IPR042197 -
Trme2332g00001 752 Gene3D - 16 185 IPR035897 -
Trme2332g00001 752 ProSiteProfiles TIR domain profile. 17 184 IPR000157 GO:0007165
Trme2332g00001 752 PRINTS Disease resistance protein signature 219 234 - -
Trme2332g00001 752 PRINTS Disease resistance protein signature 297 311 - -
Trme2332g00001 752 PRINTS Disease resistance protein signature 389 403 - -
Trme2332g00001 752 PRINTS Disease resistance protein signature 626 642 - -
Trme2332g00001 752 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 740 IPR044974 GO:0006952
Trme2332g00001 752 Gene3D Ribonuclease Inhibitor 484 752 IPR032675 -
Trme2332g00001 752 SMART till_3 18 159 IPR000157 GO:0007165
Trme2332g00001 752 Pfam NB-ARC domain 213 424 IPR002182 GO:0043531
Trme2332g00001 752 SUPERFAMILY "Winged helix" DNA-binding domain 425 526 IPR036390 -
Trme2332g00001 752 Pfam TIR domain 18 182 IPR000157 GO:0007165
Trme2332g00001 752 Gene3D - 186 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2332g00001 Trme-Chr2332 90 2707 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2332g00001 15 717 WRKY Transcription Factor Family AT4G12020 30.137 8.79e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2332g00001 - - cam:101502375 1043.49