Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23317g00001 GATACATCTCAATCAGCTCAAATATTCACAGAAAAGGAACTTAAAAAAGCCACCAACAACTACGACGAAAGTTTAATCATCGGTAGAGGAGGTTTTGGTACAGTTTACAAAGGAGTTTTAACAGACAATAAAATTGTCGCTGTTAAAAAGTCCAAAATAATAGACGAAAATCAAATCGAACAATTCATTAATGAGGTAGTTGTTCTGTCCCAGATAAATCATAGGAATGTTGTCAAACTCTTGGGATGTTGTTTGGAGACAGAAGTTCCTTCCTTGGTGTATGAATTCGTTAGCAATGGTACGCTNNNNNNNNNNANNNNGCTTTTCGAATTCATACAAAATTCTAAAGATAAAACAAATAATTCAACATGGAAAACACGTTTAAGGATAGCTGCAGAGACCGCTGGAGCTTTATCGTATCTACATTCATCTGCATCAATACCAATTATTCATAGAGATGTTAAAAGTACCAATATTCTCTTGGATGACAATTACACCGCAAAAGTTTCCGATTTTGGAGCTTCGAGATTGATTCCACTTGATCAAACCGAGATAGCAACAATGGTACAAGGAACTCTTGGATACTTAGATCCAGAGTATATGCAAACACATCATTTAACTGAGAAAAGTGATGTCTATAGCTTTGGCGTTGTTCTTGCAGAGCTTCTAACAGGGGACAAGCCTATTTCTTTTAATAGGTCAGAAGAGAACACTAGTCTTGCTATGCACTTTTTGTCTTGTTTAAAACAAGATCGAATTTTCGAAGCTATTCAAGTTGGTATTTTGAATGATGAAAACAAGGAAGAGATTAAGGAGGTTGCTATTCTTGCAGCAAGTTGTTTGAGTCTTAGAGGTGAGGAAAGACCTAGTATGAAGGAAGTGGCTATGGAGTTGGATAGTATAAGGTTAATGGAGAAGCATCCTTGGAATGATACAGAGCAAAATTCTGAGAGTCAACGCTTACTTCATGAAGCATCTTCTAGCATTTATAATGAGATTGGTGATAATAGCTATAATCTTGGATATACTGCTGGGTATGATAGCTTGAAAGATCAACCATTAATTTCCTTGGATGATGGAAGATGA 1086 0.3573 DTSQSAQIFTEKELKKATNNYDESLIIGRGGFGTVYKGVLTDNKIVAVKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLXXXXXLFEFIQNSKDKTNNSTWKTRLRIAAETAGALSYLHSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLIPLDQTEIATMVQGTLGYLDPEYMQTHHLTEKSDVYSFGVVLAELLTGDKPISFNRSEENTSLAMHFLSCLKQDRIFEAIQVGILNDENKEEIKEVAILAASCLSLRGEERPSMKEVAMELDSIRLMEKHPWNDTEQNSESQRLLHEASSSIYNEIGDNSYNLGYTAGYDSLKDQPLISLDDGR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23317g00001 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Trme23317g00001 361 Gene3D Transferase(Phosphotransferase) domain 1 105 327 - -
Trme23317g00001 361 PIRSF ILK 2 319 - -
Trme23317g00001 361 Pfam Protein kinase domain 23 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23317g00001 361 FunFam Wall-associated receptor kinase 2 1 96 - -
Trme23317g00001 361 CDD STKc_IRAK 27 301 - -
Trme23317g00001 361 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Trme23317g00001 361 FunFam Wall-associated receptor kinase 2 97 321 - -
Trme23317g00001 361 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Trme23317g00001 361 SMART serkin_6 21 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23317g00001 361 ProSiteProfiles Protein kinase domain profile. 21 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme23317g00001 361 SUPERFAMILY Protein kinase-like (PK-like) 5 298 IPR011009 -
Trme23317g00001 361 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 6 312 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23317g00001 Trme-Chr23317 1 1086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23317g00001 6 361 Receptor kinase-like Gene Family AT1G21230 55.742 1.38e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trme23317g00001 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23317g00001 - - tpra:123893257 654.825