Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme233157g00001 GTCTGCTCTTCTTGTAAAGTCGCAGTTCATCGGAAGTGCTATGGTATACAAGACAATGTAGACGAGTCTTGGTTGTGTTCTTGGTGTAAGCAAAAGGGCGATGTTGATGATTCGGCGACTCCATGTGTTCTTTGCTCAAAGAAGGGTGGTGCTTTAAAACCAGTTAATAGTGCTGTTGAAGATGTTGGGTCTGCCCAGTTTGTGCACCTGTTTTGTTGTCTGTGGATGCCAGAGGTTTATATTGATGATTTGAAGAAGATGGAGCCTATTATGAATGTGGCAGACATCAAGGAAACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGTGGTGCTTGTGTTCGGTGTACTCATG 361 0.4238 VCSSCKVAVHRKCYGIQDNVDESWLCSWCKQKGDVDDSATPCVLCSKKGGALKPVNSAVEDVGSAQFVHLFCCLWMPEVYIDDLKKMEPIMNVADIKETRRKLVCNVCKLKCGACVRCTH 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme233157g00001 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 35 IPR013083 -
Trme233157g00001 120 ProSiteProfiles Extended PHD (ePHD) domain profile. 39 120 IPR034732 -
Trme233157g00001 120 Pfam PHD-zinc-finger like domain 41 119 - -
Trme233157g00001 120 PANTHER PHD FINGER PROTEINS 1 120 - -
Trme233157g00001 120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 120 IPR013083 -
Trme233157g00001 120 SUPERFAMILY FYVE/PHD zinc finger 2 32 IPR011011 -
Trme233157g00001 120 Pfam PHD-finger 1 30 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme233157g00001 1 120 C2H2 Transcription Factor Family AT3G14740 30.081 1.49e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme233157g00001 - - tpra:123896915 259.996