Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme23288g00001 ATGGACGATCCAGAATTTACAATGGCAACAGTTGCTAATTTTTTGGAGCAACTGCACGCCAACATGTCATCGCCACATGAGAAAGAACTTATAACAGGACGATTATTAGGTGTTTCCAGGAGAAGAAAGGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGCTCATAAACATTCTCAGAAATGGAACCCCTCTTGCAAAAGTTAATGTAGCTTCCACTCTGAGTATCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCAGTTTTAAAATATGAATCAACTGATGCTAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGACGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACCTTATGGAATCAACTAAATCCACAGAACAAGGAAGACAAAGTTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGGGAAAAAGATGGTTATTGGAAAGTAACATTAGAAGCTGGAGGTGTGGATATCATTGTGGGTCTCTTGTCTTCAGATAATTCTTTTTCTCAGTCGAATGCAGCTTCCCTGTTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCGGTCAAAGTTTTACTTCAACTTATTGGTCAGAAAAATGACATTTCTGTGCGAGCCAGCGCTGCCGATGCCCTAGAGGCCCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTTAATGAAGATGGTGTTCCAATCCTTATCGGAGCTATTGTTGCTCCTTCAACAGAATGTATGCGAGGTGATGGTGGTCGGGCCTTGCAAGAGCATGCAACTCGAGCTTTAGCCAACATCTACGGGGGCATGTCTGCTTTAATATTATATCTTGGGGAACTTTCTCATTCTCCTCGCCTTGCTGCACCAGTTGGTGATATAATTGGCGCACTTGCTTATGCACTCATGGTCTTTGTGGAAAACCTTGATGTTGATGAGGAACATTTTGATGCAACTCAGAT 1082 0.4205 MDDPEFTMATVANFLEQLHANMSSPHEKELITGRLLGVSRRRKDARALIGSHAQAMPLLINILRNGTPLAKVNVASTLSILCKDEDLRLKVLLGGCIPPLLSVLKYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPQNKEDKVVEGFITGALRNLCGEKDGYWKVTLEAGGVDIIVGLLSSDNSFSQSNAASLLARLMLAFSDSIPKVIDSGAVKVLLQLIGQKNDISVRASAADALEALSSKSTKAKKAIVNEDGVPILIGAIVAPSTECMRGDGGRALQEHATRALANIYGGMSALILYLGELSHSPRLAAPVGDIIGALAYALMVFVENLDVDEEHFDATQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme23288g00001 360 Gene3D - 128 329 IPR011989 -
Trme23288g00001 360 SUPERFAMILY ARM repeat 44 281 IPR016024 -
Trme23288g00001 360 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 228 272 IPR000225 GO:0005515
Trme23288g00001 360 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 359 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme23288g00001 360 Gene3D - 5 127 IPR011989 -
Trme23288g00001 360 SMART arm_5 129 173 IPR000225 GO:0005515
Trme23288g00001 360 SMART arm_5 84 124 IPR000225 GO:0005515
Trme23288g00001 360 SMART arm_5 42 83 IPR000225 GO:0005515
Trme23288g00001 360 SMART arm_5 175 215 IPR000225 GO:0005515
Trme23288g00001 360 SMART arm_5 260 309 IPR000225 GO:0005515
Trme23288g00001 360 SMART arm_5 217 258 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme23288g00001 Trme-Chr23288 1 1082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme23288g00001 14 236 U-box Gene Family AT2G23140 27.679 2.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme23288g00001 - - psat:127104201 615.15