Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme232822g00001 ATGTGTTTGATGTTTTTGACAAACAGAGTCATTGCTGGAAAGAACTTAAGAAGGAACCTGAGGGGAAACAAAGAGGGAGGACAATGTCTGGCCACAAACCCCATTGACAGATGTTGGAGGTGTGACCCAAATTGGGCTGATAATCGCCAAAAGCTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACCCGTGGAG 196 0.4694 MCLMFLTNRVIAGKNLRRNLRGNKEGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRG 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme232822g00001 65 Gene3D - 32 65 IPR012334 -
Trme232822g00001 65 PANTHER PECTATE LYASE 18-RELATED 16 64 IPR045032 GO:0030570
Trme232822g00001 65 SUPERFAMILY Pectin lyase-like 23 63 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme232822g00001 Trme-Chr232822 12 207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme232822g00001 16 65 Polysaccharide Lyase AT1G14420 64.000 2.32e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme232822g00001 K01728 - gmx:100796307 98.5969